Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03421 ATGATCTCAATCACCTCCACTGAATTGAACTACTTAGTCTTCCGTTACCTTCACGAATCAGGTTTTACACATTCTGCATTTGCATTCGGGTATGAAGCGGGGATTGATAGATGCAAAAATGATGATAATGTGGTTCCACCGGGTGCTCTTGTTACATTCATACAGAAAGGCATTCAATATCTTGAGCTGGAAGCTAACCTGAGTGGTAGTGATGCTGACATGGATGAGGATTTCTCGTTTTTACAACCTCTGGATCTTATCACAAAGGAGCCCAATGAGCTACACAATATAGTAAAAGCCAAAAAGGAAAATCTACGTCAACATAAATCCGAATCGAATAAAATAGTGAATGGCTCGACTCACGACAACGCAAGGAGAGAACATGTTCAGGAAAGAGAGAAGGAGAGAAAAGAAAAGGAAAATGAACAGAGACTGGAAAAAATAAGGTTAGAAAAAGAGAAGGAGCAACCAAAGGATGAATATAAAGAAACACAACATACCGATCAAAACCAAAACCATACAGAGAAACATGAAGATAAGACTACTGTTGAAAATCTAAACAATAGAGCACATGGAGGATGTCATATAAGGGAAAAAGTAAAGCTGTTATGCACAGGGCCTGAGCCAATGGAGATTTCACAGAGCCCCATGTCGTCGCCTAATGATACTCCATGTGATGATGTAAAAATTTTGAAAGGTCATTCATCCGAGGTTTTTGCCTGTGCTTGGAATCCATCAGCTCCACTTCTTGCGTCTGGATCTGGAGATTCAACAGCTCGAATTTGGAAAATTGCTGATGGGCCTTGTGACTCTGGTGTGGAAAATGAACCAGTAAATGTTGTGGTGCTGCAGCACTTTAAAGAAAGCACCAATGAAAAGAGCAAGGATGTGACAACACTCGATTGGAATGGAGACGGAACACTATTGGCAACTGGTTCCTACGATGGTCAAGCAAGAATATGGAGTAGAGATGGGGAGTTGAATAGTACACTAAACAAGCACAAAGGTCCAATATTTTCCTTGAAGTGGAACAAGAAGGGGGATTATCTTCTTAGTGGAAGTGTGGATAAGACTGCTATTGTGTGGAATATAAAGACTGGGGAATGGAAACAACTATTCGAATTTCATACTGGTCCAACTCTTGATGTTGATTGGCGAAACAATGTTACGTTTGCTACATGCTCCACTGATAAAATGATACATGTTTGCAAAATTGGAGAAAATAGACCAATCAAAACTTTCTCCGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCAACAGGTTCTTTGCTGGCTTCCTGCTCCGATGATCACACTGCAAAAATATGGAGTTTAAAGCAGGATAACTTTTTGCATGATTTGAAGGAACATGTCAAGGGGATATATACAATTCGATGGAGCCCTACAGGCCCTGGTACCAACAGTCCCAATCAGCAGTTAGTGCTAGCAAGTGCCTCATTTGACTCAACGATAAAGCTATGGGACGTGGAACTAGGGAGTGTAATCTACAGCTTAAATGGTCACAGGGATCCTGTATATTCGGTTGCATTCAGTCCTAATGGGGAGTATCTGGCAAGTGGCTCTATGGACAGATACGTGCATATATGGTCCGTGAAGGAAGGCAAGATTGTAAAAACATACACCGGAAAAGGTGGGATATTTGAAGTTAATTGGAACAAAGATGGTGATAAAGTTGCTGCTTGTTTTTCAAACAATATAGTTTGTGTTTTGGATTTCCGAATGTAA 1752 0.407 MISITSTELNYLVFRYLHESGFTHSAFAFGYEAGIDRCKNDDNVVPPGALVTFIQKGIQYLELEANLSGSDADMDEDFSFLQPLDLITKEPNELHNIVKAKKENLRQHKSESNKIVNGSTHDNARREHVQEREKERKEKENEQRLEKIRLEKEKEQPKDEYKETQHTDQNQNHTEKHEDKTTVENLNNRAHGGCHIREKVKLLCTGPEPMEISQSPMSSPNDTPCDDVKILKGHSSEVFACAWNPSAPLLASGSGDSTARIWKIADGPCDSGVENEPVNVVVLQHFKESTNEKSKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNSTLNKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWNIKTGEWKQLFEFHTGPTLDVDWRNNVTFATCSTDKMIHVCKIGENRPIKTFSGHQDEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDNFLHDLKEHVKGIYTIRWSPTGPGTNSPNQQLVLASASFDSTIKLWDVELGSVIYSLNGHRDPVYSVAFSPNGEYLASGSMDRYVHIWSVKEGKIVKTYTGKGGIFEVNWNKDGDKVAACFSNNIVCVLDFRM 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03421 583 ProSitePatterns Trp-Asp (WD) repeats signature. 484 498 IPR019775 -
Viun9g03421 583 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Viun9g03421 583 Gene3D - 219 583 IPR015943 GO:0005515
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 507 544 - -
Viun9g03421 583 MobiDBLite consensus disorder prediction 120 190 - -
Viun9g03421 583 PANTHER WD40 REPEAT PROTEIN 4 582 IPR045183 GO:0003714|GO:0016575
Viun9g03421 583 SUPERFAMILY WD40 repeat-like 225 581 IPR036322 GO:0005515
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 507 548 IPR001680 GO:0005515
Viun9g03421 583 MobiDBLite consensus disorder prediction 101 190 - -
Viun9g03421 583 Pfam LisH 8 33 IPR006594 GO:0005515
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 231 264 IPR001680 GO:0005515
Viun9g03421 583 CDD WD40 228 539 - -
Viun9g03421 583 ProSitePatterns Trp-Asp (WD) repeats signature. 350 364 IPR019775 -
Viun9g03421 583 Pfam WD domain, G-beta repeat 502 539 IPR001680 GO:0005515
Viun9g03421 583 Pfam WD domain, G-beta repeat 409 446 IPR001680 GO:0005515
Viun9g03421 583 Pfam WD domain, G-beta repeat 452 497 IPR001680 GO:0005515
Viun9g03421 583 Pfam WD domain, G-beta repeat 228 263 IPR001680 GO:0005515
Viun9g03421 583 Pfam WD domain, G-beta repeat 294 322 IPR001680 GO:0005515
Viun9g03421 583 Pfam WD domain, G-beta repeat 327 363 IPR001680 GO:0005515
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 290 322 - -
Viun9g03421 583 SMART WD40_4 407 446 IPR001680 GO:0005515
Viun9g03421 583 SMART WD40_4 324 363 IPR001680 GO:0005515
Viun9g03421 583 SMART WD40_4 366 404 IPR001680 GO:0005515
Viun9g03421 583 SMART WD40_4 542 580 IPR001680 GO:0005515
Viun9g03421 583 SMART WD40_4 449 497 IPR001680 GO:0005515
Viun9g03421 583 SMART WD40_4 500 539 IPR001680 GO:0005515
Viun9g03421 583 SMART WD40_4 279 322 IPR001680 GO:0005515
Viun9g03421 583 SMART WD40_4 224 263 IPR001680 GO:0005515
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 372 IPR001680 GO:0005515
Viun9g03421 583 FunFam WD40 repeat-containing protein HOS15 219 583 - -
Viun9g03421 583 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 93 - -
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 414 448 - -
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 414 455 IPR001680 GO:0005515
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 456 506 IPR001680 GO:0005515
Viun9g03421 583 Coils Coil 125 156 - -
Viun9g03421 583 SMART Lish 5 37 IPR006594 GO:0005515
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 322 IPR001680 GO:0005515
Viun9g03421 583 PRINTS G protein beta WD-40 repeat signature 484 498 IPR020472 -
Viun9g03421 583 PRINTS G protein beta WD-40 repeat signature 526 540 IPR020472 -
Viun9g03421 583 PRINTS G protein beta WD-40 repeat signature 250 264 IPR020472 -
Viun9g03421 583 Gene3D - 2 91 - -
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 231 264 - -
Viun9g03421 583 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03421 Viun-Chr9 40485737 40491964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03421 411 581 Miscellaneous Gene Families AT5G08390 31.792 7.93e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03421 K04508 - gmx:100783690 1046.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03421 9 40485737 40491964 Viun9g03421 9 40485737 40491964 ECH