LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g03310	ATGGCGGAGGAAGCACAGTATTCATCGGGAACGGAGTCGGCATCCCTCAAGCGCAAGTACGAAGACCAATCCTCCGACAGACCCACCGGATTCTCTGCGGGTCCCGCCACCGGCATCGAACTCGCCAAGCAGCGTGCTCAAGAAGTCGCCGCTCGCCTTCTCAGTGTCACTCCTCCTCCCCCGCTCGACGCCAAGCGTCCCAAACCCGATAACGGTGCTCCTTCCTCCGGTTTCGATTCTTACGATGCGAAGCCTCAGTACTCGGCCGTTCCTCCAGTCTCCTACAGTCACCAAGGAACGAGCAAGAAGATTGATATCCCTAATGGCAGGGTTGGTGTGATTATTGGCAAAGGTGGAGAGACCATTAAGTATCTCCAGTTGCAGTCTGGTGCCAAAATTCAAGTTACTCGCGATATGGACGCCGACCCTAATTCTGTTACCAGGACTGTTGAGCTTATGGGTACTCCCGAGGCAATTGCCTCTGCAGAGAAACTCATTAATGAAGTTCTTGCTGAGGCTGAATCTGGAGGTTCTGGCATTGTTGCTCGAAGACTCACCGGACAAGCTGGGTCGGATGAATTTGTCATGAGAATTCCGAATAATAAGGTTGGCCTTATAATTGGCAAAGGTGGAGAAACCATAAAGAATATGCAAGCTTCTACTGGTGCACGGATTCAGGTGATACCTCTGCATCTTCCTCCAGGTGACACATCAACTGAAAGAACATTGAAAATTGATGGGACACCTGAGCAAATTGAGTCTGCAAAGGAGTTGGTTAATCAAATCATCAGTGGCGAGAATCGTCTTAGGAATCCTGCAATGTCTGGTGGTTATCCTCAGCAAGGTTACCAATCTCGACCACCCTCTAACTGGGCTCCCCCTGCTCCAATGCAACAGCCTGGTTATGGTTATGTGCAGCCTGGTACTTATTCTGGTCCATCACCTCAGTATAATATGCCTCAACCACCTTATGCTGGCTATCCTCCCCAACAACCAGGTGGATATTCCACCAGCTGGGACCAGTCTTCTGCACCACCTCACCAACAGTCTACACATGCTGGGGGCTATGATTACTATAGTCAACAGCCACAGCAACCGCAAAATCCTGGAGGGCCAGCACCTCCAGGGGATAGCTCTACATACAGTTACAGTCAACCCCCTTCATCTGGTTATAGCCAACCGGGACAGGGTTATTCTCAGGACAGCTATAATGCATACAATGCACAGTCTCAATCAGGGTATGGACAGGCACAAACATATGATCAGCAGCAAGGCTATGGCTCAGGTACTACTGGCTATGGTAGTGGGAATAACCAAGCACAAGAGGGCCACACTGCGAGCTATGCATCCCAGGGAGATTCAGCCCCAGCTCCATCTACCCAACCGACCACCATGGCACAGCAAGGTTATCCTACCAGCCAACAGCCCAGTTCAAACACTGCCAACTACCCACCTCAGGGAACTCCTCAGTCAGGTTATGGGGTTCCCCCTACATCCCAAGCTGCTTATGGAAGTCAACCACAGCCAGGTTATGGACCTGGTTATGGAGCCCCTCAATCTCAAAAACCAAGTGGCAATCCTCCTGTTTATGGACAGTCGCAATCACCTAGTGCAGTAGGAGGCTATGGTCAGTCAGCATATCCTGCTCAGCCTCCACCTTCCAGTTATACTCAACCCCAAGCAGAAACTGGTGCTCAGAGAGCACCTCCATCGGGCTATGGTGCAGGGCAACCCGGTTATGGTTCTCAAACATATGGTGCACCTCAGGGAGGCCAGCCTGCTTATGGTCAGGGACCACCTCCATACAGCAATAGTTCTTATGGTGCTGGTTATACTCAGGCTCCGGCCTATACTGGCGATGGTAATGGCAGTGGAAATACGCAGCCTCCTCAGACTGCTGTTGCTAAAGCATCGCCTCAGAGTTGA	1926	0.513	MAEEAQYSSGTESASLKRKYEDQSSDRPTGFSAGPATGIELAKQRAQEVAARLLSVTPPPPLDAKRPKPDNGAPSSGFDSYDAKPQYSAVPPVSYSHQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSVTRTVELMGTPEAIASAEKLINEVLAEAESGGSGIVARRLTGQAGSDEFVMRIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPEQIESAKELVNQIISGENRLRNPAMSGGYPQQGYQSRPPSNWAPPAPMQQPGYGYVQPGTYSGPSPQYNMPQPPYAGYPPQQPGGYSTSWDQSSAPPHQQSTHAGGYDYYSQQPQQPQNPGGPAPPGDSSTYSYSQPPSSGYSQPGQGYSQDSYNAYNAQSQSGYGQAQTYDQQQGYGSGTTGYGSGNNQAQEGHTASYASQGDSAPAPSTQPTTMAQQGYPTSQQPSSNTANYPPQGTPQSGYGVPPTSQAAYGSQPQPGYGPGYGAPQSQKPSGNPPVYGQSQSPSAVGGYGQSAYPAQPPPSSYTQPQAETGAQRAPPSGYGAGQPGYGSQTYGAPQGGQPAYGQGPPPYSNSSYGAGYTQAPAYTGDGNGSGNTQPPQTAVAKASPQS	641

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g03310	641	MobiDBLite	consensus disorder prediction	1	101	-	-
	Viun9g03310	641	MobiDBLite	consensus disorder prediction	270	641	-	-
	Viun9g03310	641	MobiDBLite	consensus disorder prediction	548	565	-	-
	Viun9g03310	641	Gene3D	K Homology domain, type 1	188	288	IPR036612	GO:0003723
	Viun9g03310	641	Gene3D	K Homology domain, type 1	94	187	IPR036612	GO:0003723
	Viun9g03310	641	ProSiteProfiles	Type-1 KH domain profile.	191	259	-	-
	Viun9g03310	641	MobiDBLite	consensus disorder prediction	598	641	-	-
	Viun9g03310	641	FunFam	KH domain-containing protein	186	287	-	-
	Viun9g03310	641	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	194	266	IPR036612	GO:0003723
	Viun9g03310	641	ProSiteProfiles	Type-1 KH domain profile.	99	166	-	-
	Viun9g03310	641	MobiDBLite	consensus disorder prediction	519	541	-	-
	Viun9g03310	641	MobiDBLite	consensus disorder prediction	331	366	-	-
	Viun9g03310	641	PANTHER	KH DOMAIN CONTAINING RNA BINDING PROTEIN	89	459	-	-
	Viun9g03310	641	SMART	kh_6	98	171	IPR004087	GO:0003676
	Viun9g03310	641	SMART	kh_6	190	264	IPR004087	GO:0003676
	Viun9g03310	641	MobiDBLite	consensus disorder prediction	374	506	-	-
	Viun9g03310	641	Pfam	KH domain	103	168	IPR004088	GO:0003723
	Viun9g03310	641	Pfam	KH domain	195	260	IPR004088	GO:0003723
	Viun9g03310	641	SUPERFAMILY	Eukaryotic type KH-domain (KH-domain type I)	101	177	IPR036612	GO:0003723

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun9g03310	Viun-Chr9	39855784	39861118	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g03310	K13210		-	gmx:100797476	829.32

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun9g03310	9	39855784	39861118	Viun9g03310	9	39855784	39861118	ECH