Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03271 ATGGCGGATCCCTACTACCCATATACTACTCCGGCAGCTACCGACGGAGCAAGTATTGCGAGGACCAGCTTTGCTGGATATATTCCAACTGAGCCTTCAAATTCTACTGAACTTCGGGGTATTGGATCAGATTACCTGCAAAGAGACATAGGCTTGTTTTATAGTGCAGATGATACTTTGGGATCTAGGGTTCATTCTGAGCCTGTTAAGGGTTATTCACCTCTCGCAGATCCTGACCTGAGTAAAAAACGAGATATGGCACCATTAGGCATTAGTCATGGTGTTTCTGATGTGAACAGTGAAAGAGCATCATCTAAAAACAGTTATGATGGTCTGCCTATTTCAGCAGCGGACTCAAACATTCTGTTTGTGGGTGGACTTCCAAATAACTGCACTAGAAGGGAAGTTGGGCATCTTTTCCGCCCCTTTATTGGCTATAAGGATATCAGAGTTGTTCACAAGGAGCCTAGACGTAATTGCACGATTCTACCCTTCTGCAATGCCTTGGGAGTTTGTCCATGCTTAGAATTGTTGCTGAGCAAAATCGAGCGGTGA 555 0.4468 MADPYYPYTTPAATDGASIARTSFAGYIPTEPSNSTELRGIGSDYLQRDIGLFYSADDTLGSRVHSEPVKGYSPLADPDLSKKRDMAPLGISHGVSDVNSERASSKNSYDGLPISAADSNILFVGGLPNNCTRREVGHLFRPFIGYKDIRVVHKEPRRNCTILPFCNALGVCPCLELLLSKIER 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03271 184 Gene3D - 115 170 IPR012677 -
Viun9g03271 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 122 156 IPR000504 GO:0003723
Viun9g03271 184 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 70 166 - -
Viun9g03271 184 SUPERFAMILY RNA-binding domain, RBD 89 156 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03271 Viun-Chr9 39595680 39597953 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03271 - - gmx:100809186 284.648