Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03265 ATGAAGAAGACGAAGAAGAATGTGGAAGAAAATGGGGGAGGAAAGTTCAGGGGTGCCGAGAGGTCTGCGTATTTCGCACGCAGAGAGGCAGCGAAGGTGCTGAGAGTTGTTCTCGAAGGAGACGCTAAGCGCCGCGCTCTTGCCTCCATCAAATCCCTCATCTATCAACCTTCCGTTAGGAACAAGAAGGCCACCTTCGCCCTCCTTTGTGAAACCCTAAAACATCTTCCTATCATCAAGGATGTCTTGGAAGCTGCTTCCATTCTCAATACCAAGTGGAAGAGACAACAAGAATTGGTTTATATCATTGTCTATGATATCCTTTTCGGCCAGGCGGTTTCACTAGTTGGTGATGCAGAGAAGTACCTTATGCGACACGAAGGCGCCCTGCGTTCGTCTCTTAAACAGCTTTTGTTACAGAGAAATGTGAAGACTGTTAAGCAGTTGATTGCTCTGCATGAAATTCCGGATGTTTCTGTACCTCGGTATGTTCGTGTGAATACGCTTAAATTGGATGTTGATTCTGCCTTGCTCGAACTTCAGAAAAATTACTCGGTTCAAAAAGATAATCTGCTGGCTGAGTTACTGATACTCCCACCAGGTACTGATTTACATGATCACCCTCTAGTAAAAAATGGCAGTATCTTTATGCAAGGTAAGGCAAGTTCCATGGCAGCACCAGCTCTTAGCCCTCAACCAGGATGGGAGGTTATCGATGCGTGTGCAGCACCGGGAAACAAAACTATTCACCTTGCTGCCCTTATGAAGAGTAGGGGAAAGATTGTAGCATGTGAGCTGAAAAAAGAAAGAGTTAAGCGATTGAAAGACACTATAAAGCTATCTGGGGCATCTAACATACAAGTCCTGAATGAGGATTTCTTGAACATAAATCCCAAGGATCCTTCATATTCTAAGGTGAACGCTATTCTCTTGGATCCTTCCTGCTCTGGTTCTGGTACTTCTGCCTCAAGACTAGACCATCTGCTCCCATCTAAAACAGCAGGTCAGGATACTGATATGGAAAGATTGAGTAAGCTTGCAACTTTCCAGAGAAAGGCTCTTGAGCATGCTTTACTTTTTCCTGCTCTTGAAAGAGTTGTCTATAGTACATGTTCAATCAACCAAATTGAGAATGAAGATGTCATCAAATCTGTTCTTCCCATTGCCGAATCATATGGATTTCAATTGGCGAAGCCCTTCCCCGAGTGGCAATGCCGTGGTCTTCCGGTGTTTGAAGGCTCTGAATGCCTGATTCGGACAGATCCTGCCGAGCATGGCGAGGGTTTCTTCATTGCTTTGTTTGTTAGGAAAGCTGCGATATCTTCGGAGTGTTCAAATAAAAACGAAACTAGAAGTTTCCGTAACACTTCCGTAATTAAAAACGCGCAAAGAAAGAAGAAACGTATGCCGTTTATTGGCACTAATCCATTCAAAATGTGGTTATATGATCAAGTGATGTAG 1461 0.4394 MKKTKKNVEENGGGKFRGAERSAYFARREAAKVLRVVLEGDAKRRALASIKSLIYQPSVRNKKATFALLCETLKHLPIIKDVLEAASILNTKWKRQQELVYIIVYDILFGQAVSLVGDAEKYLMRHEGALRSSLKQLLLQRNVKTVKQLIALHEIPDVSVPRYVRVNTLKLDVDSALLELQKNYSVQKDNLLAELLILPPGTDLHDHPLVKNGSIFMQGKASSMAAPALSPQPGWEVIDACAAPGNKTIHLAALMKSRGKIVACELKKERVKRLKDTIKLSGASNIQVLNEDFLNINPKDPSYSKVNAILLDPSCSGSGTSASRLDHLLPSKTAGQDTDMERLSKLATFQRKALEHALLFPALERVVYSTCSINQIENEDVIKSVLPIAESYGFQLAKPFPEWQCRGLPVFEGSECLIRTDPAEHGEGFFIALFVRKAAISSECSNKNETRSFRNTSVIKNAQRKKKRMPFIGTNPFKMWLYDQVM 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03265 486 Gene3D Vaccinia Virus protein VP39 218 443 IPR029063 -
Viun9g03265 486 Pfam 16S rRNA methyltransferase RsmB/F 228 434 IPR001678 GO:0008168
Viun9g03265 486 PRINTS RNA (C5-cytosine) methyltransferase signature 209 223 IPR023267 GO:0001510
Viun9g03265 486 PRINTS RNA (C5-cytosine) methyltransferase signature 307 319 IPR023267 GO:0001510
Viun9g03265 486 PRINTS RNA (C5-cytosine) methyltransferase signature 363 379 IPR023267 GO:0001510
Viun9g03265 486 PRINTS RNA (C5-cytosine) methyltransferase signature 238 248 IPR023267 GO:0001510
Viun9g03265 486 PRINTS RNA (C5-cytosine) methyltransferase signature 419 436 IPR023267 GO:0001510
Viun9g03265 486 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 29 437 IPR023267 GO:0001510
Viun9g03265 486 CDD AdoMet_MTases 237 325 - -
Viun9g03265 486 FunFam Methyltransferase NSUN5, putative 218 443 - -
Viun9g03265 486 FunFam Putative 28S rRNA (Cytosine-C(5))-methyltransferase 153 217 - -
Viun9g03265 486 Gene3D Sun protein; domain 3 153 217 - -
Viun9g03265 486 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 152 437 IPR001678 GO:0008168
Viun9g03265 486 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 161 437 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03265 Viun-Chr9 39559951 39565349 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03265 K15264 - gmx:100775620 841.262
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03265 9 39559951 39565349 Viun9g03265 9 39559951 39565349 ECH