Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03246 ATGGAGAGGTTTTCGTCTAACAGGCGTCGTTCTGATGGAGAGGGCAGTTCCGCTTCAGCCGAGGACAATCGCCGGAAGCGCGCCAGAGTTTATTTTGATTTCGATGGCGCTCATGCTGCGATTGCGAGTTCTTCGAATGCTGGGAAATCCACTGCATCTGCCGAATATGGGGATTATGATGATATTCAGGGATCGTCTGTTCGATCCAACGATGATGCTTTGCAGTTGATGTCTTCTGGTGAGGGGAGTAACTTTGATGAAGGAGATGACAGTGACATCGCAAATGTAGATGATCTAGTAACCAAGATGGATCTTACGGATGATTTGTTGCACATGGTTTTCTCCTTTTTGGATCACTCCAATCTCTGCAAAGCTGCCAGGGTTTGTAAGCAGTGGAGAACTGCTAGTGCTCACGAAGACTTCTGGAAGAGTTTGAATTTTGAAGATCGAAACATATCTGTTGAGCAATTCGAGGACATCTGTAGGCGTTATCCTAAAATCGCTACAATCCGCTTGTCCGGTCCTCCCTCTTACCAGCTTGTCATGAAGGCCGTCTCTTCGTTAAGAAATCTTGAGGCTTTAACGTTGGGAAGAGGAAATATAATGGATAGTTTTTTCCATGCTTTGGCTGATTGTTCTATGTTGAGGAGACTGAGCATCAATGATGCTGTACTTGGCAGTGGTATTCAGGAAATATCAGTTAATCACGACAGACTGTGTCACCTCCAGTTGACTAAGTGCCGTGTGATGCGTATAGCTGTCAGGTGCCCACAACTCGAAACCATGTCCTTGAAGCGCAGTAACATGGCTCAGACTGTACTCCACTGCCCCCTTTTGCAAGAGCTTGATATAGGGTCTTGCCACAAACTTCCTGATTCTGCTATTCGATCAGCTGTGACATCATGCCCGCAATTAGTTTCTTTGGACATGTCTAATTGTTCATGTGTTAGTGATGAAACATTAAGGGAGATAGCCCAGAATTGTGCCAACCTCAGTTTCCTTGATGCATCATACTGTCCAAATGTATCCCTAGAGACTGTTCGACTGCCAATGTTAACAGTTCTGAAGCTACACAGTTGTGAGGGCATCACTTCAGCTTCGATGGCTGCAATAGCTTATAGTTCCATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTATTGACATCAGTGTCTTTAGATCTTCCTCGCTTGCAGAACATTAGATTGGTTCATTGTCGCAAATTTGCCGATTTGAATTTGATGACCCTAATGCTGTCTTCTATTTTGGTGTCCAATTGTCCTGTGCTCCATCGTATAAACATCACATCAAATTCACTTCAAAAATTAACGATACCAAAGCAGGACAGCTTAACCACATTGGCTTTGCAATGCCAATCTTTGCAAGAAGTGGATCTCTCTGAATGTGAATCTTTGAATAACTCTGTATGCAATGTTTTTAATGATGGTGGAGGCTGTCCAGTGTTGAAATCATTAATTCTCGATAATTGTGAGAGTTTGACATCGGTTCAATTCATCAGTACCTCTTTAATCTGTCTTTCACTTGGTGGTTGCCGGGCAATAACTAATCTTGATCTCACATGCCCTAATCTAGAGAAACTTGTATTGGATGGCTGTGATCATTTGGAAAGAGCGTCATTTTGTCCTGTTGGTCTTTCATCCCTCAATTTAGGAATATGTCCAAAATTGAGTACACTCAGCATCGAAGCACCTTATATGGTTTCACTTGAGTTGAAAGGATGTGGTGTACTATCTGAAGCATTCATTAATTGTCCACTCTTAACATCTCTCGACGCTTCCTTTTGCAGCCAACTAACTGATGACTGCTTGTCTGCTACAACTGTCTCATGCCCACTGATTGAGTCATTGATATTGATGTCATGCCCATCAATTGGTTCAGATGGTCTTCGATCTCTATTTTGTCTTCCAAATTTGACTGTTCTTGACTTATCATACACTTTCTTGGTGAACTTGCAGCCTGTTTTTGATTCTTGTTTACAGCTAAAGGTGTTAAAGCTGCAAGCATGCAAATATCTCACTGAAACATCACTTGAACCTCTTTACAAAGGAGGGGCTTTACCAGCACTTCAGGAGTTAGACTTGTCTTATGGAACTTTCTCTCAGTCAGCCATAGATGAGCTTCTTGCTTGCTGCACAAACCTCACTCATGTGAGCTTGAATGGCTGTTTGAATATGCATGATTTGAATTGGGGATGCAGTTGTGGGCAGAGTAAGAATCTGCCTGCTGCAAACACCCTATCCAGGGCAAGTTCTACTGAGAATGTTCCTGAATCAAGTGAGCAATCCCCTCGCTTGTTGCAAAACCTTAATTGTGTTGGATGTCCAAATATTAGGAAGGTTGTCATTCCATTCAGGGCAAATTGTTGTCATTTGTTAATTTTAAACCTTTCGCTGTCCGCAAATTTGAAAGAGGTTGATGTTACATGTCTCAACCTATGCTTTCTTAATTTAAGCAATTGTTCCTCTTTGGAAAATTTGAAGCTAGAGTGTCCAAGATTGACTAGTCTATTCCTTCAGTCTTGCAATGTTGACGAGGAAGCTGTTGAAGCTGCTATATCGAAATGCACTATACTGGAGACCCTTGATGTTCGCTTTTGTCCAAAGATAAGCTCAATGAGCATGGGAAGATTACGCACAATTTGTTCGAGTTTGAAGCGTATATACAGCAGTTCGTCAACTCTGTTACCTTGA 2712 0.4222 MERFSSNRRRSDGEGSSASAEDNRRKRARVYFDFDGAHAAIASSSNAGKSTASAEYGDYDDIQGSSVRSNDDALQLMSSGEGSNFDEGDDSDIANVDDLVTKMDLTDDLLHMVFSFLDHSNLCKAARVCKQWRTASAHEDFWKSLNFEDRNISVEQFEDICRRYPKIATIRLSGPPSYQLVMKAVSSLRNLEALTLGRGNIMDSFFHALADCSMLRRLSINDAVLGSGIQEISVNHDRLCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQTVLHCPLLQELDIGSCHKLPDSAIRSAVTSCPQLVSLDMSNCSCVSDETLREIAQNCANLSFLDASYCPNVSLETVRLPMLTVLKLHSCEGITSASMAAIAYSSMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLMTLMLSSILVSNCPVLHRINITSNSLQKLTIPKQDSLTTLALQCQSLQEVDLSECESLNNSVCNVFNDGGGCPVLKSLILDNCESLTSVQFISTSLICLSLGGCRAITNLDLTCPNLEKLVLDGCDHLERASFCPVGLSSLNLGICPKLSTLSIEAPYMVSLELKGCGVLSEAFINCPLLTSLDASFCSQLTDDCLSATTVSCPLIESLILMSCPSIGSDGLRSLFCLPNLTVLDLSYTFLVNLQPVFDSCLQLKVLKLQACKYLTETSLEPLYKGGALPALQELDLSYGTFSQSAIDELLACCTNLTHVSLNGCLNMHDLNWGCSCGQSKNLPAANTLSRASSTENVPESSEQSPRLLQNLNCVGCPNIRKVVIPFRANCCHLLILNLSLSANLKEVDVTCLNLCFLNLSNCSSLENLKLECPRLTSLFLQSCNVDEEAVEAAISKCTILETLDVRFCPKISSMSMGRLRTICSSLKRIYSSSSTLLP 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03246 903 CDD F-box_FBXO41 107 146 - -
Viun9g03246 903 SMART LRR_CC_2 591 616 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 302 327 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 395 420 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 617 642 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 486 516 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 862 893 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 349 374 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 458 482 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 528 553 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 837 861 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 693 717 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 276 301 IPR006553 -
Viun9g03246 903 SMART LRR_CC_2 665 690 IPR006553 -
Viun9g03246 903 FunFam F-box/LRR-repeat protein 15 97 346 - -
Viun9g03246 903 FunFam F-box/LRR-repeat protein 15 658 743 - -
Viun9g03246 903 Gene3D Ribonuclease Inhibitor 748 901 IPR032675 -
Viun9g03246 903 PANTHER OS10G0396666 PROTEIN 78 900 - -
Viun9g03246 903 FunFam F-box/LRR-repeat protein 15 isoform C 754 897 - -
Viun9g03246 903 FunFam F-box/LRR-repeat protein 15 348 508 - -
Viun9g03246 903 SUPERFAMILY F-box domain 104 135 IPR036047 GO:0005515
Viun9g03246 903 MobiDBLite consensus disorder prediction 1 24 - -
Viun9g03246 903 SUPERFAMILY RNI-like 126 391 - -
Viun9g03246 903 FunFam F-box/LRR-repeat protein 15 509 656 - -
Viun9g03246 903 Gene3D Ribonuclease Inhibitor 98 348 IPR032675 -
Viun9g03246 903 Gene3D Ribonuclease Inhibitor 657 747 IPR032675 -
Viun9g03246 903 Gene3D Ribonuclease Inhibitor 510 656 IPR032675 -
Viun9g03246 903 Gene3D Ribonuclease Inhibitor 349 509 IPR032675 -
Viun9g03246 903 SUPERFAMILY L domain-like 584 898 - -
Viun9g03246 903 SMART fbox_2 105 145 IPR001810 GO:0005515
Viun9g03246 903 ProSiteProfiles F-box domain profile. 99 145 IPR001810 GO:0005515
Viun9g03246 903 Pfam F-box-like 107 147 IPR001810 GO:0005515
Viun9g03246 903 SUPERFAMILY L domain-like 423 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03246 Viun-Chr9 39449754 39455669 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03246 - - vum:124826181 1575.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03246 9 39449754 39455669 Viun9g03246 9 39449754 39455669 ECH