Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03210 ATGGGAAAAAAACGCGCAAAAAAAAAAATTAGGCTTGGGTCTGGGCCCGCGGTAGGCGACGATGGGCTTGGCCCAAGCACAAAATACATTTCATATCACACTCGCTTCCCGCTTAAAAATTTGAAATGCGTATCATATTTGTTTCAAGTTCTGGCGCAGAGTAGAGAAGAGATTATTTCCACAATGAATTGGGACGAGAACGATGAATTTGAGATCCCTCTTACTCAAACGGCAACGGGTTTTCACGCGCTCGCTTCCGTCGACGACAATCAACGGCCAATGAAGAAGCCAAAACGAAAAACGACGGCGCTTCGTGGCAGCGGCAAGGAGAACGCTCGACCCAGCGAGGGCAGCGAAATTCTGAACTGCAGCTTGGATTTCATTCCTTCCTCCATAGATTGCGTTTCGGTTTGCAGCGTTGAACACTCGGAACAAGAGGACAGTGATTCTTCTTCCGCGTCTTTGTCGGAGCTGAAACAGAAGGGGAATTATCTTCGCAACTCGATAGAGTCGAAGCTGGTGGTTTCGAGAACCGGCGAGCTTAACTCTGCAGTTGCAGATTCTGATTCGGAGCTTGGTCTGTTGATGAATTTGTGCGACGAGTTGGAGGAAGTAGATAGTTCCGTTCGGTGTCCCCTTTGTGATGTTGATATTTCGAATTTGACTGAGGAACAAAGACATCTTCATACCAATAATTGTCTTGACAAAGGAGATAACGTTGCGATTCCTGAAGACGAGAAGGGTGCTCAACATGGGCCAAAAGTCGCTTCTGTTGTTGATTGGCTCCACGGGCTCGGTTTGGGAAAGTATGAAGTGATTTTCGTTAGGGAAGAAGTTGATTGGGACACGCTGCAATGGCTCACAGAAGAGGATCTCTTAAGCATGGGTATCACTGCATTTGGGCCAAGAAAAAAGATTGTGCATGCCCTGTGTGAACTAAGAAAAGGAGATGCCGCTGCAAATGAGAAACAAGGGAGTGCGTTGGCGGAGCCTAGAAGGATCAGAAACCAGAAAGTCAAATTAAAGCATGACAAATCTGAAAGAAAAGCTGACGGCTCTAATAAACCAGCGGCAAACAAATTAATTACTGAATATTTTCCGGGGTTTGCTTCCAAAGAAAAGAAAGTTTCTGCCCCTCCTGGAGAACAAAAGGAAATGAAAAACAGTGACTTGGATTCTGGTCGTAAGCACAAATCAAAAGTTGTGACAACAAATAGAAAGCTCCGTGATGTTCCCAAATGGTGTTCTGTACAAGGAACGCCTTTCCGAGTGGATGCTTTCAAATATCTTAGAGGAGATTGTTCCCACTGGTTTCTCACACACTTCCACTTGGACCATTATCAAGGTCTTACCAAGTCATTCAATCATGGAAAGATTTATTGCTCCTCCATTACAGCTAGACTAGTAAATACGAACATTGGAATTTCATATGATAAATTACATGTTTTGCCTCTGAACCAAAAGATTGAAATAGCTGGTGTTGATGTGACTTGCTTTGATGCCAACCACTGTCCAGGTTCCATACTCATACTCTTTCAACCTCCAAATGGTAAGGCTGTGCTGCACACGGGTGATTTCCGGTTTAGTGACGAAATGACAATCAATCCTTTACTCAAGATGTGTCCTATCAATACTCTAATTCTTGATACAACATACTGCAATCCACAGTATGACTTTCCAAAACAAGAGGCGGTAATACAATTCGTCATTGACGCCATTCAAGCAGAAACTTTTAATCCCAAGACTCTTTTTCTGATCGGCAGCTATACCATTGGAAAAGAAAGGATATTCTTGGAGGTTGCTCGCGCGCTTCGTAAAAAGGTTCACGTGACTGCGGCAAAGTTGCGTCTTTTAAAATGTTTGGAATTTAAGGAGGAGGATATACAGTGGTTCACTTCAAATGAACATGAAAGCAACATTCATGTTGCCCCTATGTGGACGCTCGCAAGCTTCAAAAGATTGAAGCAAATATCAAGTCAATATAAGAATCGGTACAACCTTATAGTTGCTTTCTCCCCCACTGGCTGGACGTTTGGCAAAGGTAAAAAGAAGTCTCCTGGAAGAAGATGGCAGCAGGGTACTATTATAAGGTATGAAGTACCGTATAGTGAGCATAGCAGCTTTACAGAACTCAGAGAGTTTGTAAAACTTGTATCTCCTAGCAACATTATACCAAGTGTTAATAACGATGGACCAGAATCTTCTGATGCAATGATTTCTCTATTGTTATCTTGA 2235 0.4313 MGKKRAKKKIRLGSGPAVGDDGLGPSTKYISYHTRFPLKNLKCVSYLFQVLAQSREEIISTMNWDENDEFEIPLTQTATGFHALASVDDNQRPMKKPKRKTTALRGSGKENARPSEGSEILNCSLDFIPSSIDCVSVCSVEHSEQEDSDSSSASLSELKQKGNYLRNSIESKLVVSRTGELNSAVADSDSELGLLMNLCDELEEVDSSVRCPLCDVDISNLTEEQRHLHTNNCLDKGDNVAIPEDEKGAQHGPKVASVVDWLHGLGLGKYEVIFVREEVDWDTLQWLTEEDLLSMGITAFGPRKKIVHALCELRKGDAAANEKQGSALAEPRRIRNQKVKLKHDKSERKADGSNKPAANKLITEYFPGFASKEKKVSAPPGEQKEMKNSDLDSGRKHKSKVVTTNRKLRDVPKWCSVQGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSITARLVNTNIGISYDKLHVLPLNQKIEIAGVDVTCFDANHCPGSILILFQPPNGKAVLHTGDFRFSDEMTINPLLKMCPINTLILDTTYCNPQYDFPKQEAVIQFVIDAIQAETFNPKTLFLIGSYTIGKERIFLEVARALRKKVHVTAAKLRLLKCLEFKEEDIQWFTSNEHESNIHVAPMWTLASFKRLKQISSQYKNRYNLIVAFSPTGWTFGKGKKKSPGRRWQQGTIIRYEVPYSEHSSFTELREFVKLVSPSNIIPSVNNDGPESSDAMISLLLS 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03210 744 FunFam DNA cross-link repair 1A protein 558 705 - -
Viun9g03210 744 MobiDBLite consensus disorder prediction 377 402 - -
Viun9g03210 744 Gene3D - 558 705 - -
Viun9g03210 744 CDD SAM_superfamily 257 310 - -
Viun9g03210 744 ProSiteProfiles SAM domain profile. 253 316 IPR001660 GO:0005515
Viun9g03210 744 MobiDBLite consensus disorder prediction 90 116 - -
Viun9g03210 744 SUPERFAMILY SAM/Pointed domain 254 315 IPR013761 -
Viun9g03210 744 Gene3D - 418 727 IPR036866 -
Viun9g03210 744 MobiDBLite consensus disorder prediction 373 402 - -
Viun9g03210 744 Pfam SAM domain (Sterile alpha motif) 254 312 IPR001660 GO:0005515
Viun9g03210 744 CDD SNM1A-1C-like_MBL-fold 403 555 - -
Viun9g03210 744 Pfam Beta-lactamase superfamily domain 438 557 IPR001279 -
Viun9g03210 744 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 406 738 - -
Viun9g03210 744 SMART SAM_4 250 316 IPR001660 GO:0005515
Viun9g03210 744 Gene3D - 244 319 IPR013761 -
Viun9g03210 744 MobiDBLite consensus disorder prediction 333 354 - -
Viun9g03210 744 MobiDBLite consensus disorder prediction 320 355 - -
Viun9g03210 744 SUPERFAMILY Metallo-hydrolase/oxidoreductase 422 726 IPR036866 -
Viun9g03210 744 Pfam DNA repair metallo-beta-lactamase 626 730 IPR011084 -
Viun9g03210 744 FunFam DNA ligase 6 417 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03210 Viun-Chr9 39249571 39255703 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03210 256 310 Glycosyltransferase AT3G07170 49.091 1.45e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03210 K15340 - gmx:100816321 1149.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03210 9 39249571 39255703 Viun9g03210 9 39249571 39255703 ECH