Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03193 ATGCTTGTCTCGGGAGTGTCCTCATCATCATGGGATCTCAAATGGCTTCTGCAATTCGTGTTCTCCGCGTTCGTCTTGGCGATGGGGTTGCACGCGCTCGTGAAGAACACCGCCTCCAAGTACTTCGAGGTTGACGCCACTTTCGAAGGGGAACAACACCAGCACCACCAGCACCACCGCCACGACGCCATGCCCGGACTTCTCATGGACGATTCTGTCTGCGCCGTTTGTCGCAACCCCGGCAGCAAGAAGTGTTCGCGATGCAAATCCGTTCGTTACTGCTCACAAGCATGCCAACAGGCGCACTGGAAATCTGAGCATAAGATGAGATGCAAAGAGTTTCAGAAGCAAGGAGTTTCACAAAATGGATTAATTAATCGAGGGTTCAAAGCTTCTGCTGCTGTGAATAGAAGTACAACATCAATTGCTCTCATTCCCGAATGTGGTCGCGGAATTTCCAGGCCTATCAAGCAGCTTAAGGATGTTCTTTTTCCTTATGATGATTTTGTCAATTTGTTTAACTGGGACAAACCAGGATTTCCTCCATGTGGACTGTTAAATTGTGGAAACAGCTGCTTTGCCAATGTTGTTCTTCAATGTCTCTCTTTCACAAGGCCACTTATTGCTTACCTATTGGAGAAGGGACACCGGAGTGAATGCTGTCATAATGATTGGTGCTTTCTATGTGAATTTGAAACCCATGTTGAAAAAGTAAGGCTAAGTTCTAAAGCGTTTTCTACAATGAATATTCTGTCTCGTTTGCCTAATATTGGTGGTACACTGGGTTATGGAAGACAAGAAGATGCACACGAGTTCATGAGGTTTTCCATTGATGCCATGCAATCAGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTTCCTCCCAAGCTTCAGGAAACAACTCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGTACCGAATGTGAGAAGAATTCTAATCAGTATGAAAATATGATGGATTTGACAGTTGAAATTCATGGAGATGCTGCTTCCCTGGAGGAATGTCTGGACCAGTTTACTGCCAAAGAGTGGCTTCATGGAGATAATATGTATAAATGTGACGGGTGCAAGGGCTATGTCAAGGCATGGAAACGTCTCACAGTTAAACGAGCTCCAAATATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGGAAACTTAACAAGAGAGTAGCTTTCCCGGAGACTTTAGACCTTAGCCCTTACATGAGTGAAGTTGGAGATGGATCTGATATTTATAAGCTATACGCAGTCGTGGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTCTGTGGGAACTGGTATAGAATAGATGATTGGAAGGTCGTTGGAGTGGAGTTGGAAGAGGTGCTTTCTCAGAGCGCTTATATGCTGTTGTATAGCAGGGTTCATGCTCGAGCTTCAGGACTTCAAAGTATAGTCTCGCCGGAGACGGCAGAGGTGCAGCCTAGCTCAACTGAACACGCCGAATGCCTCCCGGAATCGAAAACTGAGAATTACAGTAGTCCAGAAATGATTGAAGACATGCCTTTGGCTGAAACAAACTCCAGAGTTAAAAGAGAGCAGTCGAAGGATGTTGAAATTATTGATGTAAACGATCATGTCTCTGTCTGTAACGGTGTTGAATCATCATATATGCACGGTTCTGAAGCTGACAAAGACATGGGGGACGTAGAAGATTCAGATGGATCAAATACATGCTCATCTGTTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGAGAGTGATTTGGCTAAGTCGATTCCTACTTTGTCTGTGCCTAATAATGGCTCTTGTGTTTCAGTGGATTATGAAAACGCAAGAGAAGATTCAGATTCAAATCAGGCAGATGCGATTAAAAGCATAGTGACAGCAAATGGCTTTGCAGATCATAGCAACGGTTATGTCAGTGCAAACAGATACGATGATGTCCCAGTGGAAGACGGTGATGGTTCTTTTTTCAGTGAAACAACCTCGGCTGAAAAGCATGGGAAATTGGCCTCCGACAAATACGAATGTGAGAAAGGAAACAGAGTTAAGGAAGTGGAAATATGA 2139 0.4362 MLVSGVSSSSWDLKWLLQFVFSAFVLAMGLHALVKNTASKYFEVDATFEGEQHQHHQHHRHDAMPGLLMDDSVCAVCRNPGSKKCSRCKSVRYCSQACQQAHWKSEHKMRCKEFQKQGVSQNGLINRGFKASAAVNRSTTSIALIPECGRGISRPIKQLKDVLFPYDDFVNLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKGHRSECCHNDWCFLCEFETHVEKVRLSSKAFSTMNILSRLPNIGGTLGYGRQEDAHEFMRFSIDAMQSVCLDEFGGEKAVPPKLQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKRAPNILTIALKRFQSGRFGKLNKRVAFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFCGNWYRIDDWKVVGVELEEVLSQSAYMLLYSRVHARASGLQSIVSPETAEVQPSSTEHAECLPESKTENYSSPEMIEDMPLAETNSRVKREQSKDVEIIDVNDHVSVCNGVESSYMHGSEADKDMGDVEDSDGSNTCSSVLEEISVCMEEQDESDLAKSIPTLSVPNNGSCVSVDYENAREDSDSNQADAIKSIVTANGFADHSNGYVSANRYDDVPVEDGDGSFFSETTSAEKHGKLASDKYECEKGNRVKEVEI 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03193 712 ProSiteProfiles Zinc finger MYND-type profile. 74 111 IPR002893 -
Viun9g03193 712 Pfam Ubiquitin carboxyl-terminal hydrolase 183 486 IPR001394 GO:0004843|GO:0016579
Viun9g03193 712 MobiDBLite consensus disorder prediction 503 526 - -
Viun9g03193 712 Pfam MYND finger 74 111 IPR002893 -
Viun9g03193 712 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 184 199 IPR018200 GO:0004843|GO:0006511
Viun9g03193 712 Gene3D - 67 117 - -
Viun9g03193 712 SUPERFAMILY Cysteine proteinases 179 491 IPR038765 -
Viun9g03193 712 Gene3D Cysteine proteinases 179 498 - -
Viun9g03193 712 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 62 490 - -
Viun9g03193 712 ProSitePatterns Zinc finger MYND-type signature. 74 111 IPR002893 -
Viun9g03193 712 SUPERFAMILY HIT/MYND zinc finger-like 71 115 - -
Viun9g03193 712 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 183 489 IPR028889 -
Viun9g03193 712 CDD Peptidase_C19E 182 487 - -
Viun9g03193 712 FunFam Ubiquitin carboxyl-terminal hydrolase 15 177 497 - -
Viun9g03193 712 FunFam Ubiquitin carboxyl-terminal hydrolase 15 66 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03193 Viun-Chr9 39169864 39175444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03193 12 494 Miscellaneous Gene Families AT4G31670 64.596 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03193 K11855 - gmx:100810577 1111.67