Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03108 ATGCACGCGTGTATATCAATTTCGACCTTCTTTACAGGCAGATACTTTAAGCATCTGGGATTTGAAGTCTGTTATGTTCGCAATTTTACTGACGTTGATGACAAGATAATTGCTAGAGCGAAAGAGTTAGGAGAAGATCCAATCAGTTTGAGCCGGCGCTATTGTGAAGAATTCTGTCGAGACATGATAACTCTTAATTGTCTGCCTCCCTCTGTGGAACCAAAGGTCTCGGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAATAATGGGTATGCCTACGTTGTTGATGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAACTATCCAGTCGAGATCTAGAAGATAACCGAGCTGGTGAGAGGGTTGCAGTTGACTTAAGGAAGAAAAATCCTGCTGATTTTGCTCTGTGGAAGTCTTCAAAGCCTGGGGAGCCATTTTGGGAAAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAGTGCAGTGCCATGAGTGCAGCTTATCTTGGTTACTCTTTTGACATCCACGGTGGAGGAATTGATCTTGTGTTTCCTCACCATGAGAATGAAATTGCTCAAAGTTGTGCTGCTTGTAATAAAAGTGATATAAGCGTATGGATGCATAATGGTTTTGTTACCATTGATTCTGTGAAGATGTCAAAATCTTTGGGAAATTTTTTCACAATACGTCAGGTTATAGACATTTACCATCCTCTGGCTTTGAGATATTTTTTGATGAGTGCCCATTATCGATCTCCTGTGAACTACTCAAATGTACAACTTGAAAGTGCTTCAGACCGTATCTTTTATATATACGAGACATTACACGAATGCAAAAGCTTATTGAATCAGCATGATCAGACAACTAGAAAAGATTCCATCCCACCAGATACATTGAATATTATTGATAAGTTCCAGGATGTTTTTCTGACCTCAATGTCGGATGATCTTCACACTCCAGTTGTATTGGCTGGAATGTCTGATCCCTTAAAATCAATTAATGATTTGCTGCATACCCGCAAGGGGAAAAAACAACAATTTCGAATAGAGTCACTTGCAGCTTTAGAGAAGAGCATTGGGGATGTTCTTACTGTTTTAGGACTAATGCCTGCAAGTTACTCTGAGGTTTTGCAGCAGCTTAAGGAAAAAGCTTTAAAGCGTGCAAACTTGACAGAAGAGAAAGTGTTGGAGAAAATTGAAGAACGGGCTGTTGCTAGAATAGAAAAGGACTACGCTAAATCAGATGCAATTAGGAAGGATTTAGCTATTCTTGGTATTACTCTTATGGACAGTCCAGATGGCACAACTTGGAGGCCTACCATTCCTCTTCCACTTCAACATCTCCTCTAG 1377 0.4031 MHACISISTFFTGRYFKHLGFEVCYVRNFTDVDDKIIARAKELGEDPISLSRRYCEEFCRDMITLNCLPPSVEPKVSEHMPQIIDMIEKILNNGYAYVVDGDVYFNVEKFPEYGKLSSRDLEDNRAGERVAVDLRKKNPADFALWKSSKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACNKSDISVWMHNGFVTIDSVKMSKSLGNFFTIRQVIDIYHPLALRYFLMSAHYRSPVNYSNVQLESASDRIFYIYETLHECKSLLNQHDQTTRKDSIPPDTLNIIDKFQDVFLTSMSDDLHTPVVLAGMSDPLKSINDLLHTRKGKKQQFRIESLAALEKSIGDVLTVLGLMPASYSEVLQQLKEKALKRANLTEEKVLEKIEERAVARIEKDYAKSDAIRKDLAILGITLMDSPDGTTWRPTIPLPLQHLL 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03108 458 Hamap Cysteine--tRNA ligase [cysS]. 1 449 IPR015803 GO:0004817|GO:0005524|GO:0006423
Viun9g03108 458 PRINTS Cysteinyl-tRNA synthetase signature 152 170 IPR024909 -
Viun9g03108 458 PRINTS Cysteinyl-tRNA synthetase signature 183 204 IPR024909 -
Viun9g03108 458 PRINTS Cysteinyl-tRNA synthetase signature 23 32 IPR024909 -
Viun9g03108 458 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 300 448 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Viun9g03108 458 Coils Coil 382 402 - -
Viun9g03108 458 Pfam tRNA synthetases class I (C) catalytic domain 6 273 IPR032678 -
Viun9g03108 458 PANTHER CYSTEINYL-TRNA SYNTHETASE 2 452 IPR024909 -
Viun9g03108 458 FunFam Cysteine-tRNA ligase-like protein 115 265 - -
Viun9g03108 458 CDD CysRS_core 14 266 IPR032678 -
Viun9g03108 458 SUPERFAMILY Nucleotidylyl transferase 11 273 - -
Viun9g03108 458 NCBIfam cysteine--tRNA ligase 11 447 IPR015803 GO:0004817|GO:0005524|GO:0006423
Viun9g03108 458 Gene3D HUPs 2 266 IPR014729 -
Viun9g03108 458 Gene3D - 267 448 - -
Viun9g03108 458 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 266 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03108 Viun-Chr9 38586940 38591396 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03108 K01883 - gmx:100786700 858.981