Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03102 ATGAAGCAAGCTTCGGCCGAGGCAGTTCCTTCGCTATCTTCCACGCCATCGTTCACGGAGGCGACGACATCGTCGTCATCATCCGCTGCTGCGGCGGAGGACCTGGCGGTAGGGTCACGGGACGGTGGCGGCGGCGCTCAGGAGACGGTGGCGGTGGATCGGCGAGGCGAGTACTCCGCTGTGTGTCGATGGACGGTGCACAATTTCCCGAGAATAAAGGCTAGGGCACTGTGGAGCAAATACTTCGAGGTAGGCGGTTACGATTGTCGGTTGCTAATATATCCCAAGGGTGACTCACAGGCGCTTCCAGGGTACATCTCCATCTACCTCCAAATCATGGACCCTCGCGGTACCTCCTCTTCCAAATGGGACTGTTTCGCGAGTTATAGGTTGGCAATCGTGAACGTCGCCGACGATTCCAAAACCATTCACCGCGATTCCTGGCACCGATTCTCCAGTAAGAAGAAATCGCACGGGTGGTGTGATTTCACACCCTCTTCCACTGTTTTCGACCCCAAATTGGGATACCTGTTCAATACGGATTCCGTTTTGATCACTGCGGATATTCTCATTCTCAATGAGTCCGTTAATTTCACCCGGGACAACAATGAGTTGCAGTCCTCCTCTTCATCCTCGTCCTCGACAAGTTCCTCCGTTGTTGCGGGTCCTGTGTCTGATGTGTTGAGTGGTAAGTTCACTTGGAAAGTGCATAATTTCAGTCTGTTTAAGGAGATGATCAAAACACAGAAGATAATGAGCCCGGTGTTCCCTGCGGGGGAGTGTAATTTGAGAATAAGTGTGTACCAAAGCTCTGTGAATGGGGTCGAGTATTTGTCTATGTGTTTGGAGAGCAAGGACACGGATAAGACTGTGGTGTTATCTGATAGGAGTTGTTGGTGTTTGTTTAGGATGTCTGTGTTGAACCAGAGGCCTGGTTCCAATCACATGCATAGGGATTCTTATGGCCGGTTTGCGGCTGATAATAAGAGCGGTGACAATACCAGCTTGGGATGGAATGATTACATGAAAATGTCAGATTTTATAGGTGTGGATTCGGGGTTTTTGGTGGATGACACCGCAGTTTTTAGCACCTCATTTCATGTGATCAAGGAGTTTAGCAGCTTCTCCAAGAATGGTTCTGTGATTGCCGGGAGAAGTGGGAGTGGTGCTAGGAAGTCTGATGGGCATATTGGAAAGTTCACTTGGAGAATTGAGAATTTTACTAGGTTGAAGGATTTGCTAAAGAAGAGGAAAATCACGGGGCTGTGCATCAAGAGCCGGAGGTTTCAGATTGGTAATAGGGATTGTCGACTTATTGTTTACCCTCGAGGGCAGTCTCAGCCACCATGTCACCTTTCAGTGTTTCTTGAAGTTACAGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGTTTATCAGTTGTGAACCAGAAGATGGAGGATAAATCTGTCACCAAGGAATCTCAGAACCGCTACTCAAAAGCTGCAAAGGATTGGGGTTGGCGTGAATTCGTGACTCTCACCAGTCTCTTTGATCAAGATTCAGGGTTTCTTGTCCAGGACACTGTCATATTCTCTGCGGAAGTTCTTATATTGAAGGAGACATCAATAATGCAGGATTTTACTGAGCATGATTCTGAGTTGAGCAGCAGTGGCTCTCCTCTGGATGCTGGCAAAAGAAGTTCATTTACATGGAAAGTTGAGAATTTCCTGTCTTTCAAGGAAATAATGGAGACACGAAAAATCTTCAGTAAATTCTTTCAAGCTGGTGGATGTGAACTTCGAATTGGTGTATACGAGTCGTTTGACACGATATGTATTTATTTAGAGAGTGACCAGGCTGTTGGTAGTGATCCAGATAAAAATTTCTGGGTGAGATACAGGATGGCTGTTGTTAATCAAAAGAACCCAACCAAGACAGTTTGGAAAGAATCTTCTATCTGCACAAAGACGTGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGTGGATGCAGGATTTCTTGTTCGTGACACTGTTGTTTTCGTATGTGAAATATTGGATTGCTGTCCATGGTTTGAGTTTTCCGATTTAGAGGTTTTAGCATCAGAGGATGATCAAGATGCATTGACAACTGACCCTGATGAGCTCATTGACTCTGAAGACAGTGAAGGGATAAGTGGAGATGAGGAAGATATTTTCAGAAATCTTCTTTCCAGAGCTGGATTCCATTTAACATACGGAGATAATCCTTCTCAGCCACAAGTTACTTTAAGGGAGAAACTTCTAATGGATGCTGGTGCAATTGCAGGGTTTCTTACTGGTCTCCGAGTCTATCTTGACGATCCTGCAAAAGTGAAGCGCCTGCTTCTACCTACCAAGCTGTCTGGTAGTTGTGATGGGAAGAAGGCCACCAAAGCTGATGAATCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTTTTGCAGCAAGCTATCATAGATTTACTATTAGATATAATGGTTGAGTGCTGTCAACCTTCTGAAGTAGGCCCTGTTGCTGATTCTGTTGATGCATGTTCTAAACCTTCTCCGGATGGAAGTGGAGCTGCTAGTCCTCTTGAGTGTGAAAGAGAAAGTGGGGCAATGGAGTCTGCACGAGTTCCTGGTAATGAGAGATTGGATTCAGTTGTTGTAGAAAGCAGTAATACATCTGCTGTGCAGAGCTCTGATTTAAAAGGGAATGGTATTCAGGAAAAAGCTGTTCCTGGACATCCCATTTGTCCACCAGAGACATCTGCGACCGCATCAGAAAATGCATCATTTCGCTCAAAGACCAAGTGGCCAGAACAGTCTGAGGAGCTTTTAGGTTTGATTGTAAACTCATTAAGAGCTTTGGATGGGGCTGTTCCTCAAGGCTGTCCAGAACCAAGACGTCGGCCTCAATCTGCACAAAAAATTACTCTTGTATTGGACAAAGCTCCTAAGCATTTGCAAGCTGACCTGGTTGCTTTGGTACCTAAATTGGTTGAGCAGTCAGAACACCCACTTGCTGCCTATGCACTTCTTGAGCGTCTTCAAAAGACAGATGCAGAACCTGCTTTACGAATACCAGTTTTTGGGGCTCTTAGTCAATTGGAGTGTGGTAGTGAAGTTTGGGAACGCATTCTTTTTCAGTCATTTGAGCTTTTGACTGACTCAAATGATGAACCCCTTGCTACAACGATAGATTTTATATTCAAAGCGGCATCTCAATGTCAACACCTCCCTGAAGCAGTTAGGTCTGTTCGTGTCAGGCTGAAAAATCTAGGTCTTGAGGTGTCACCTTGCGTCCTTGATTTTTTGAGTAAGACTATAAATAGTTGGGGGGATGTTGCTGAAACCATACTTAGGGACATTGATTGCGACGATGACTATGGTGACAATTGCTCAGCTCTTCCATGTGGGATTTTCTTATTCGGAGAACATGGCACTTCTCCCAGTGGGCTGCATGTGATTGATGAGCAGGCTTATCAAGCTAGTCGTCATTTTTCTGATATTTATATACTGTTTGAGATGTTATCTATTCCTTGCCTTGTTGCTGAAGCTTCCCAAACATTTGAGAGAGCTGTAGCTCGAGGTGCAATAAGTGCTCAGTCTGTAGCCCTGGTATTGCAAAGCCGTCTTTCCCAAAGATTGAACAATAATGGAAGATATGTTTCTGAAAATTTCCAACATACAGATGGTGCTACAGAAGGAGATGCCTGTGAGCAATTGGGAGCTCAGAGGGATGATTACACTTCTGTTCTTGGCCTTGCTGAAAATTTGGCCCTCTCTAGAGATCCATGCGTGAAAGAATTTGTTAAACTGCTCTACATGATAATGTTTAGATGGTTTGCCAATGAATCTTATAGGGGGAGGATGCTGAAGAGGCTTGTTGACCGTGCCACTAGCAATACTGACAGTGGTCGTGAAGTAGATTTTGATTTGGATATATTGGTTACTTTGGTCTGTGAGGAGCAGGAGTTTATCAGGCCTGTTTTGAGTATGATGCGTGAAGTTGCTGAACTTGCAAATGTTGATAGGGCTGCACTATGGCACCAGTTGTGCGCTAGCGAGGATGAAATTATTCGCGTTCGTGAAGAAAGCAAAACTGAGATTTCTAATATGGCTAAGGAAAAATCTGTTATATCACAAAAGCTAAGTGAATCTGAAGTGACAAACAATCGATTGAAGTCTGAAATGAGGGCTGAGATGGATCGATTTTCTCGGGAAAAGAAGGAACTAGCTGAACAAGCTCAAGAAGTTGAGAGTCAGCTTGAATGGCTCCGCTCAGAACGAGATGATGAAATTGCAAAGCTCTCTGCGGAGAAAAAAGCTCTTCATGACCGTTTACATGATGCAGAGACGCAACTTTCTCAGTTGAAGTCTCGGAAACGTGATGAATTAAAGAAAGTAGTCAAGGAGAAAAATGCCCTTGCTGAGAGATTGAAGAATGCTGAAGCTGCACGCAAGAGATTTGATGAAGAACTGAAAAGATTTGCGACAGAGAATGTGACTCGGGAGGAAATTCGGCAATCCCTTGAAGACGAAGTCCGTAGATTGACTCAAACGGTTGGGCAAACTGAAGGGGAAAAGCGTGAGAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGCATGGAATCAAAGTTGCAAGCTTGCCAGCAATATATTCACACACTTGAGGCCTCACTCCAGGAGGAAATGTCAAGACATGCACCTCTATACGGCGCTGGTCTGGAGGCTTTGTCATTGAAAGAGTTGGAAACACTATCACGTATTCATGAAGATGGGCTTAGGCAGATCCATGCCATTCAACAGCGTAAAGGGAGTCCTGGTGGGAGCCCTCTTGTGAGTCCCCATGCTCTCCCTCACACCCATGGATTGTATCCAACTGCCTCCCTCCCTATGGCTGTGGGACTGCCTCCCTCAATCATCCCAAATGGTGTGGGGATCCACAGCAACGGCCATGTCAATGGTGCAGTTGGACCCTGGTTTAACCACTCTTGA 5028 0.4499 MKQASAEAVPSLSSTPSFTEATTSSSSSAAAAEDLAVGSRDGGGGAQETVAVDRRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNVADDSKTIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLFNTDSVLITADILILNESVNFTRDNNELQSSSSSSSSTSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVVLSDRSCWCLFRMSVLNQRPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGVDSGFLVDDTAVFSTSFHVIKEFSSFSKNGSVIAGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTEHDSELSSSGSPLDAGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPTKTVWKESSICTKTWNNSVLQFMKVSDMLEVDAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSCDGKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVDACSKPSPDGSGAASPLECERESGAMESARVPGNERLDSVVVESSNTSAVQSSDLKGNGIQEKAVPGHPICPPETSATASENASFRSKTKWPEQSEELLGLIVNSLRALDGAVPQGCPEPRRRPQSAQKITLVLDKAPKHLQADLVALVPKLVEQSEHPLAAYALLERLQKTDAEPALRIPVFGALSQLECGSEVWERILFQSFELLTDSNDEPLATTIDFIFKAASQCQHLPEAVRSVRVRLKNLGLEVSPCVLDFLSKTINSWGDVAETILRDIDCDDDYGDNCSALPCGIFLFGEHGTSPSGLHVIDEQAYQASRHFSDIYILFEMLSIPCLVAEASQTFERAVARGAISAQSVALVLQSRLSQRLNNNGRYVSENFQHTDGATEGDACEQLGAQRDDYTSVLGLAENLALSRDPCVKEFVKLLYMIMFRWFANESYRGRMLKRLVDRATSNTDSGREVDFDLDILVTLVCEEQEFIRPVLSMMREVAELANVDRAALWHQLCASEDEIIRVREESKTEISNMAKEKSVISQKLSESEVTNNRLKSEMRAEMDRFSREKKELAEQAQEVESQLEWLRSERDDEIAKLSAEKKALHDRLHDAETQLSQLKSRKRDELKKVVKEKNALAERLKNAEAARKRFDEELKRFATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSLKELETLSRIHEDGLRQIHAIQQRKGSPGGSPLVSPHALPHTHGLYPTASLPMAVGLPPSIIPNGVGIHSNGHVNGAVGPWFNHS 1675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03102 1675 Pfam MATH domain 429 535 IPR002083 GO:0005515
Viun9g03102 1675 Pfam MATH domain 577 684 IPR002083 GO:0005515
Viun9g03102 1675 Pfam MATH domain 68 191 IPR002083 GO:0005515
Viun9g03102 1675 CDD MATH 398 533 IPR002083 GO:0005515
Viun9g03102 1675 ProSiteProfiles MATH/TRAF domain profile. 229 366 IPR002083 GO:0005515
Viun9g03102 1675 ProSiteProfiles MATH/TRAF domain profile. 59 189 IPR002083 GO:0005515
Viun9g03102 1675 CDD MATH 566 688 IPR002083 GO:0005515
Viun9g03102 1675 ProSiteProfiles MATH/TRAF domain profile. 564 688 IPR002083 GO:0005515
Viun9g03102 1675 MobiDBLite consensus disorder prediction 1 32 - -
Viun9g03102 1675 SUPERFAMILY TRAF domain-like 565 689 - -
Viun9g03102 1675 MobiDBLite consensus disorder prediction 858 885 - -
Viun9g03102 1675 Coils Coil 1398 1507 - -
Viun9g03102 1675 Coils Coil 1515 1542 - -
Viun9g03102 1675 MobiDBLite consensus disorder prediction 1 44 - -
Viun9g03102 1675 SUPERFAMILY TRAF domain-like 58 197 - -
Viun9g03102 1675 ProSiteProfiles MATH/TRAF domain profile. 397 533 IPR002083 GO:0005515
Viun9g03102 1675 CDD MATH 230 362 IPR002083 GO:0005515
Viun9g03102 1675 PANTHER TRAF-LIKE FAMILY PROTEIN 25 1675 - -
Viun9g03102 1675 CDD MATH 63 189 IPR002083 GO:0005515
Viun9g03102 1675 Gene3D - 1433 1625 - -
Viun9g03102 1675 SUPERFAMILY TRAF domain-like 398 539 - -
Viun9g03102 1675 SMART math_3 569 669 IPR002083 GO:0005515
Viun9g03102 1675 SMART math_3 402 514 IPR002083 GO:0005515
Viun9g03102 1675 SMART math_3 234 347 IPR002083 GO:0005515
Viun9g03102 1675 SMART math_3 61 169 IPR002083 GO:0005515
Viun9g03102 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 225 372 IPR008974 GO:0005515
Viun9g03102 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 557 690 IPR008974 GO:0005515
Viun9g03102 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 389 542 IPR008974 GO:0005515
Viun9g03102 1675 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 45 196 IPR008974 GO:0005515
Viun9g03102 1675 SUPERFAMILY TRAF domain-like 227 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03102 Viun-Chr9 38541715 38550573 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03102 - - ccaj:109798115 3132.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03102 9 38541715 38550573 Viun9g03102 9 38541715 38550573 ECH