Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03058 ATGGACCCCTACCAGAAAGAAAAAAGTAACCTTTGTAACAAATCACAAGTGCCCTTGATGGGTAGGAGGAAAATCCAAGTGTTTGATGAGAAAAGTGATGGGTTTTTCTCTGTCGGTTGCTTGGGGTTTCAATCCGAAGATAGGTGCTACCAATTCGGAGGCTTGTTTGCCAGTGTTAGTCAGATGGGAGTGGGGGTTGGTGTGCAACCGAGTGAGCCTTCTGATTCGCGCGACAATGGTGACACAAAACTTCCCTTCAATGAACTGTTCATCAAGTACCAGGGAAAAGATGAGGTTGTTGAAGAAAGGGTTGATGGAAAGAAAAGAAAGGGTGGTTTTTCATTGAGGCTTAAGATAAAAAGCCCTTCACTGAGAAGGTTGTTTAGTGGGGCAATAGCTGGGGCTGTGTCTCGCACTGCTGTGGCACCTTTGGAGACTATAAGAACTCTTATGATGGTGGGGAATAGTGACCATTCCACCACTGAGGTGTTCCATAATATCGTGAAAACTGATGGCTGGAAGGGCTTGTTTAGGGGTAATTTTGTTAATGTCATTCGGGTTGCGCCTAGCAAAGCCATTGAGCTATTTACTTTCGATACAGTGAACAAGAACCTATCTCCAAAGCCTGGGGAAGAGTCCAAATTCCCAATTCCTGCATCATTGATTGCAGGTGCCTGTGCTGGAGTGACTTCAACCATATGTACATATCCTCTTGAATTAGTCAAGACTCGACTAACAGTCCAGAGAGATGTTTACGATGGTCTGCTTCATGCATTCTTGAAAATAATCCGAGAAGAGGGTCCTGCAGAACTTTACAGTGGGCTTGCAGCTAGTCTTATAGGAGTTGTACCCTATGCTGCGGCCAATTACTATGCCTACGACACTCTGAAGAAAGCATACAAGAAAGTTTTTAAACAAGAGAAAGTGGGGAATATTGAGACCCTTTTGATTGGTTCTGTAGCTGGTGCTATTTCAAGTAGTTCAACTTTTCCAATGGAGGTAGCTCGCAAGCAAATGCAGCTTGGTACCCTCAGTGGAAGACAGGTTTACAAGAATGTGTTTCATGCCCTTGCATGCATACTAGAACAAGAAGGGATCCAAGGTTTATACAGAGGGTTGGTACCAAGTTGCATGAAGTTGATACCAGCCGCTGGAATCTCTTTTATGTGCTACGAAGCATGCAAGAGGATCTTTCTAGAGGACGATGAGGAGGATTAG 1218 0.4433 MDPYQKEKSNLCNKSQVPLMGRRKIQVFDEKSDGFFSVGCLGFQSEDRCYQFGGLFASVSQMGVGVGVQPSEPSDSRDNGDTKLPFNELFIKYQGKDEVVEERVDGKKRKGGFSLRLKIKSPSLRRLFSGAIAGAVSRTAVAPLETIRTLMMVGNSDHSTTEVFHNIVKTDGWKGLFRGNFVNVIRVAPSKAIELFTFDTVNKNLSPKPGEESKFPIPASLIAGACAGVTSTICTYPLELVKTRLTVQRDVYDGLLHAFLKIIREEGPAELYSGLAASLIGVVPYAAANYYAYDTLKKAYKKVFKQEKVGNIETLLIGSVAGAISSSSTFPMEVARKQMQLGTLSGRQVYKNVFHALACILEQEGIQGLYRGLVPSCMKLIPAAGISFMCYEACKRIFLEDDEED 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03058 405 SUPERFAMILY Mitochondrial carrier 122 393 IPR023395 -
Viun9g03058 405 PANTHER SOLUTE CARRIER FAMILY 25 123 398 - -
Viun9g03058 405 Pfam Mitochondrial carrier protein 216 302 IPR018108 -
Viun9g03058 405 Pfam Mitochondrial carrier protein 122 205 IPR018108 -
Viun9g03058 405 Pfam Mitochondrial carrier protein 309 400 IPR018108 -
Viun9g03058 405 PRINTS Mitochondrial carrier protein signature 230 248 IPR002067 GO:0055085
Viun9g03058 405 PRINTS Mitochondrial carrier protein signature 126 139 IPR002067 GO:0055085
Viun9g03058 405 PRINTS Mitochondrial carrier protein signature 139 153 IPR002067 GO:0055085
Viun9g03058 405 PRINTS Mitochondrial carrier protein signature 272 290 IPR002067 GO:0055085
Viun9g03058 405 PRINTS Mitochondrial carrier protein signature 179 199 IPR002067 GO:0055085
Viun9g03058 405 PRINTS Mitochondrial carrier protein signature 318 340 IPR002067 GO:0055085
Viun9g03058 405 ProSiteProfiles Solute carrier (Solcar) repeat profile. 121 204 IPR018108 -
Viun9g03058 405 Gene3D Mitochondrial carrier domain 118 403 IPR023395 -
Viun9g03058 405 ProSiteProfiles Solute carrier (Solcar) repeat profile. 215 299 IPR018108 -
Viun9g03058 405 ProSiteProfiles Solute carrier (Solcar) repeat profile. 309 397 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03058 Viun-Chr9 38256381 38259979 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g03058 20 404 Organic Solute Cotransporters AT4G32400 63.010 2.31e-172 485
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03058 K14684 - gmx:100810035 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03058 9 38256381 38259979 Viun9g03058 9 38256381 38259979 ECH
Viun8g00791 8 6972972 6976131 Viun9g03058 9 38256381 38259979 PCT