Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g03002 ATGTCTAACAATCTGGTTTCAGAGCCTATGCCCAGTATGCAAATGGCTCGGTTAGAGCCGCTTATGAACAAGATTGATTCGTCAGGGAGACAGATGGAAATGGGGATTTTGGTTCCTGTGTCCAGTGATATTGTTTCACAGCCTATGGGGAGCTCAAATGAACATGTTGGGTTATTGAGAGCTGTGCCTGGTGAATCTAGGTTTCAGGGCATGCCCCTTTCGACCATGCAGAGTGGACGAGTAGAAGCACAACCGAGTAATCCAGGAATGCATCAAATTCTTTCCGCAAACCGACAGTCCATGCAAATGGGGAGGCTTCCAAATAGCGCAGGGCCTCAGCAGCAGCAGCAGCCAACAACTCCCAAGCGCAAGGCGCCAACAGAACTATCATCCAGTAGTTCCTTTAACAAGCGTGTTGCACAAATGGGAAACAGACCTTGGTTGCAGCAAGTACCTAATGCATCAAATAGAGGTTCTCTGCAGATGCAATCCCCGTCAAATGCCTCCAGGACACAGCATTCGGCAGCTTCTAGTAAGAGAAAAACACAGTTGGATAGCACTTCCGGTAAAGCCGGTACACCTCGGTCTGTGAATTCTAAAAGTCAGAATAGCCAGATAAAGCAGTCCTCCAAGGCGCAAACTGAATCATCTGAAAGTGTTAGGTCCAAGATGAGAGAGTCATTAGCTGCTGCTCTGGCCTTGGTTTCTCAACAAGGTAAACCGCAGATTCCAAATAATAATAGACCAACTGATGATGCTACCAATACTCAAGGTAAATTAGAGAACAACTCTCAGTGTTCCGGATCAACACCTACATCCATCAATGCTCCACTGGAGCAAAGTATTTCTCAATCAGTTAATTCCTCTTTTGCTGAGGTTGATTCAGTTGGCCGGGTGGAGACAGAGCACATGCAGAGTACATCATTCAAAGAAGATTTTCCTGAAAAATACAAGGACTATGAAGCAGGATCCACAAATGCATCAAACAATGAAAGCATACTGACTTCTATGCAAGTCTTGAACTGTGATAAGCAAGATTTCCAGTCATGTTACACTTTGACTACTGATGATGTTCCTTTTAGTGACAGTTTCTTTATGAAAGATGATCTTTTGCAGGGAAATGGTCTTTCCTGGGTATTATCTGATATGGTGGACGTGGGAAATCAAAGGGAAAGTCAAACTAATATAGAGCAGAGATCAGAACCTGAGGAAAAAGGTGAAGGTTGCAGGGAGGAGGCCCCTTTACCTGAACTTTTGGCATCAAAAATAGAAGCAGAACTCTTTAAACTATTTGGAGGTGTGAATAAGAAGTACAAAGAGAAAGGGAGGTCGCTTTTATTTAATTTAAAAGATCGCAACAACCCTGAACTTAGAGAAAGGGTTATGTTTGGTCAAATTCCTCCTGAACAATTATGTTCCATGACTGCAGAGGAACTTGCTTCAAAAGAGCTCTCTCAGTGGCGTATAGCCAAGGCTGAGGAGCTTGCTCAAATGGTGGTTTTACCTAATTCAGATGTTGATTTTAGGCGTTTGGTCAAGAAGACTCATAAAGGTGAGTTTCAAGTGGAAGTTGAACATGAAGACAACGTATCCATTGAGGAGGTTTCAGGTGGCACAAACTCAGTGGCTAGAAGCCAAACAGCAAAAAGGGATGTGGAAGGCACTTCTTCAAAACCTGATGTGAACAGTGATGCTGAGAAGCGCAATTTACAGAAGGATGATACATTTTCCATTACCATTTCGTCCACTGATGGCACCGATCCCATGCAGGGCCTTATGACTGATGATGCCTTGAAGGACCCTGATTTTCTTCCACCAATTGTCTCTCTTGATGAATTCATGGAATCTCTTCATTCTGAGCCACCGTTTGAAAATTTACCTCTAGAAACTGGGAAAGTGACACCTGCTTTAGACAAGGATGATTCAGGGGTTGGATCTAAATCAAAATCTTCTGATTTAACTCCAAATGAGCAAGCCGTTGTCACACCTGAGAAGTTTCCAAGCACACGTGTAACTTCAGATGCTGAAAAGGAGAAAAAGGCTGATGCTGAATCTGGGACCATTTCTTCTGATACGGCGGGATACAGTGGGAGTCAAGCTGACATGAAGTCAACTGATGATCGTACCAAGGAAATGTCTATTGATAATGCGAAGCCTGCACCCAGCGATACTGATTTCAAAGGCAATCAGTCTCATGCCGAAGGGCGATACGGTAATGATAATAAATACATGAAGGATGCAGTCCCCACTAAGGGTGAATGCCTTTGGGAGGGAATGCTTCAACCCAATATATCTACCACTCAGTCTGTCATAAGCTTCTATAAGAGTGGCGAGAAAACTGCTGCTAAAGACTGGCCTGGGTTTCTCGAGATCAAGGGAAGGGTTCGACTAGATGCATTTGAGAAATTTCTTCAAGATCTTCGATTGTCTAGGAGTCGTGCAATCATGGTTTCACATTTCCTTTCCAAGGAGTTGGACGAGCAATCAACTCTCCGTGAGGTGGCTGAGTCGTATATTTCGGACGAGAGAGTAGGATTTGCAGAGCCTGTGCATGGAGTAGAACTTTACTTTTGCCCACCTCATAAGAAAACAGTTGAAATGCTGAGCAACATACTTCCAAAGGAACAAATTGAGGCAGTTAATTCTATTGATAATGGTCTAATTGGTATTATTGTATGGAGAAAAACTAATTTAACTTCGTCTATATCACCCACCACTGCTACTCACCACAAACACAGCTCTAAAAGACAACAATACTTGAGTAGGAGACAGCAAGATATAAATGTGAATGCCAATTCCACCCATAAAGCAGTACCCCCTACGGACCTTAAGACCACTGAGAATGAGAATGATGACGATGATGATGTTCCTCCTGGATTTGGGCCACCGGCCGCCCGAGTCGAGGATGACCTGCCGGAGTTTAATTTCTCCAGTAGTTCGATTCCACCACACTTGGCCCAAAAACCAAAGGAACTATCAAATATGGTTGCATTACATTCGGTTAACCCAGCCCCACCACCTGCACGACCTGTAGAACAAATGAGAGAACTTGTGTACAAATATGGGCAAAACAAAGCAAGTGCACCTTCTTCAGTAAACTGGCAGGATAAATTTGGGGGAACCATTCAACCCTGGAATGATGATGATGATGACATACCTGAATGGCAGCCCCAAACATCCCAGAATCAGTTTCTTCCCCAACAGACAATGCATAACTTTCATCTTCGACCGCACATTGTGAATCAATCATTACCGGGTTCACAACAACAGCCTATTATGACACCACAATATCTGCAACCCCCGATGAATGTGACTCATACCCAAAGAAATTTTGACCCTCAATGGCTTCCTTCTCCCCAGGCTACCAACCTTCCCCCAAGAGGTCCACCGCCCTACGGAGCGCCTTCGCAAGGCACTACCTGGCCTCAAAATGTCTCTAGAACTAGTAGGGGATTTTAG 3459 0.4412 MSNNLVSEPMPSMQMARLEPLMNKIDSSGRQMEMGILVPVSSDIVSQPMGSSNEHVGLLRAVPGESRFQGMPLSTMQSGRVEAQPSNPGMHQILSANRQSMQMGRLPNSAGPQQQQQPTTPKRKAPTELSSSSSFNKRVAQMGNRPWLQQVPNASNRGSLQMQSPSNASRTQHSAASSKRKTQLDSTSGKAGTPRSVNSKSQNSQIKQSSKAQTESSESVRSKMRESLAAALALVSQQGKPQIPNNNRPTDDATNTQGKLENNSQCSGSTPTSINAPLEQSISQSVNSSFAEVDSVGRVETEHMQSTSFKEDFPEKYKDYEAGSTNASNNESILTSMQVLNCDKQDFQSCYTLTTDDVPFSDSFFMKDDLLQGNGLSWVLSDMVDVGNQRESQTNIEQRSEPEEKGEGCREEAPLPELLASKIEAELFKLFGGVNKKYKEKGRSLLFNLKDRNNPELRERVMFGQIPPEQLCSMTAEELASKELSQWRIAKAEELAQMVVLPNSDVDFRRLVKKTHKGEFQVEVEHEDNVSIEEVSGGTNSVARSQTAKRDVEGTSSKPDVNSDAEKRNLQKDDTFSITISSTDGTDPMQGLMTDDALKDPDFLPPIVSLDEFMESLHSEPPFENLPLETGKVTPALDKDDSGVGSKSKSSDLTPNEQAVVTPEKFPSTRVTSDAEKEKKADAESGTISSDTAGYSGSQADMKSTDDRTKEMSIDNAKPAPSDTDFKGNQSHAEGRYGNDNKYMKDAVPTKGECLWEGMLQPNISTTQSVISFYKSGEKTAAKDWPGFLEIKGRVRLDAFEKFLQDLRLSRSRAIMVSHFLSKELDEQSTLREVAESYISDERVGFAEPVHGVELYFCPPHKKTVEMLSNILPKEQIEAVNSIDNGLIGIIVWRKTNLTSSISPTTATHHKHSSKRQQYLSRRQQDINVNANSTHKAVPPTDLKTTENENDDDDDVPPGFGPPAARVEDDLPEFNFSSSSIPPHLAQKPKELSNMVALHSVNPAPPPARPVEQMRELVYKYGQNKASAPSSVNWQDKFGGTIQPWNDDDDDIPEWQPQTSQNQFLPQQTMHNFHLRPHIVNQSLPGSQQQPIMTPQYLQPPMNVTHTQRNFDPQWLPSPQATNLPPRGPPPYGAPSQGTTWPQNVSRTSRGF 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g03002 1152 MobiDBLite consensus disorder prediction 103 135 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 1137 1152 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 389 409 - -
Viun9g03002 1152 SMART mid_6 382 490 IPR003618 GO:0006351
Viun9g03002 1152 MobiDBLite consensus disorder prediction 686 702 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 551 573 - -
Viun9g03002 1152 ProSiteProfiles TFIIS central domain profile. 385 507 IPR003618 GO:0006351
Viun9g03002 1152 MobiDBLite consensus disorder prediction 238 275 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 928 944 - -
Viun9g03002 1152 Pfam SPOC domain 751 893 IPR012921 -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 647 669 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 670 685 - -
Viun9g03002 1152 Pfam Transcription factor S-II (TFIIS), central domain 403 495 IPR003618 GO:0006351
Viun9g03002 1152 MobiDBLite consensus disorder prediction 574 589 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 533 550 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 533 594 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 70 91 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 149 217 - -
Viun9g03002 1152 Gene3D - 391 482 IPR036575 GO:0006351
Viun9g03002 1152 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 115 977 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 928 986 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 149 275 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 1119 1136 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 1106 1152 - -
Viun9g03002 1152 CDD SPOC_TFIIS 755 893 - -
Viun9g03002 1152 MobiDBLite consensus disorder prediction 620 744 - -
Viun9g03002 1152 SUPERFAMILY Elongation factor TFIIS domain 2 415 483 IPR036575 GO:0006351
Viun9g03002 1152 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g03002 Viun-Chr9 37874681 37880706 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g03002 - - vum:124825671 2068.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g03002 9 37874681 37880706 Viun9g03002 9 37874681 37880706 ECH