Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02962 ATGGCCATTCTCCACTGCACCCCACTTCCATTTCTTTCCCTCAGAAGCACCCTCTATTCCTCTAAGTGCACGTTAACCTCAACACTCACACACCCAACAGCAACAAAAACAAGAAACCCGTTGTTCCTGGCGATGAACACGCTCGCCAAATCCGAACCCGTGTCGTCTTCAGGCTCTTCCTCGTCAACTTACGAGGTGCCGGAGCTAGATGCTAACGACATGGACCGCGTTGCAGAAAACACGTTTCGTAGGTACACGTGGAACACCAAGAGGAGTGGCAAAGGAACGGCCATTGTGTGGTTCAGGAATGATCTCAGAGTTTTGGATAACGAGGCTCTCTACAAGGCATGGCTTTCCTCCGAAACCGTTTTACCTGTCTACTGCGTTGACCCTCGACTCTTTGCCACTACTTATCATTTCGGCTTTCCCAAAACCGGTGCATTGAGAGCGCAATTTCTCCTTGAATGTTTGGTGGACTTGAGGAAGAATTTGATGAAAAAAGGGCTTAATTTGCTTGTACAACAAGGGAAGCCTGAGGAGATTCTTCCTTCTCTTGCCAAAGCATTTCAAGCTCACACAGTGTATGCACAGAAAGAAACGTGCAGTGAGGAGGTGAATGTTGAAAGATTAGTCATGGAAGGTCTTAAACAAGTTGGAACATCATCAGAAGAATCCAGTGGTGTCACAGTTTCAAAAAACATCCTTAAATTGCAATTAGTTTGGGGTACCACTATGTACCATCTTGATGACCTCCCTTTTGATGCCACTTCTTTGCCAGATATGTATACTCAATTTCGCAAGATTATTGAAGCCAAATGTACCATACGCTCATGCATCAAACTACCACCATCGCTAGGACCACCTCCCTTAATTGAGGATTGGGGATGCCTTCCTTCATTAGAGCAGCTTGGACTTGGCTCACAGAATGTTATCAAGGGAATGAAGTTTGTGGGGGGTGAAACTGCAGGATTGAGCAGAGTATATGAATACTTCTGGAAGAAGGATTTTCTGAAGGTTTATAAAGAGACCAGGAATGGGATGTTAGGGCCTGATTATTCTACCAAATTCTCACCGTGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGGTAAAGAGATATGAGAACGAAAGACTAGCAAATAGTTCTACCTACTGGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATCTAGGTGGCCCTAGGAAAGTTCATCGCAACTGGAGCCAAGACAAGAACTTGTTTGAATCCTGGAGAGATGGTTGTACGGGGTATCCTCTCGTAGATGCCAACATGAAAGAACTATCGACTACAGGGTTTATGTCTAATCGAGGACGACAGATTGTATGTTCCTTTCTTGTGCGTGATATGGGGATAGATTGGCGCATGGGGGCAGAATGGTTCGAGACTTGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTACGGATCAGGAGTTGGGAATGATCCCAGAGAAGATCGCTATTTCAGCATCCCAAAACAAGCACAAACATATGACCCTGAAGGTGAGTATGTTGCATACTGGTTGCCACAGTTGCGAAAAATCGAAAAGGAGAAAAGGAATTTTCCTGGAAATATGTACATTCCTCAAATTGTGCCTCTCAAGTTTGGAACAATGAGTGGAAACAACAACTATAGGTCTCGTGGTGCAAGAAGAATCAACGATAAAGGAAATGAAAGAAAATGGAACAGAAGATAA 1779 0.4384 MAILHCTPLPFLSLRSTLYSSKCTLTSTLTHPTATKTRNPLFLAMNTLAKSEPVSSSGSSSSTYEVPELDANDMDRVAENTFRRYTWNTKRSGKGTAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECLVDLRKNLMKKGLNLLVQQGKPEEILPSLAKAFQAHTVYAQKETCSEEVNVERLVMEGLKQVGTSSEESSGVTVSKNILKLQLVWGTTMYHLDDLPFDATSLPDMYTQFRKIIEAKCTIRSCIKLPPSLGPPPLIEDWGCLPSLEQLGLGSQNVIKGMKFVGGETAGLSRVYEYFWKKDFLKVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEEVKRYENERLANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKVHRNWSQDKNLFESWRDGCTGYPLVDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRKIEKEKRNFPGNMYIPQIVPLKFGTMSGNNNYRSRGARRINDKGNERKWNRR 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02962 592 PRINTS DNA photolyase signature 439 455 IPR002081 -
Viun9g02962 592 PRINTS DNA photolyase signature 498 512 IPR002081 -
Viun9g02962 592 PRINTS DNA photolyase signature 459 477 IPR002081 -
Viun9g02962 592 MobiDBLite consensus disorder prediction 576 592 - -
Viun9g02962 592 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 94 293 IPR036155 -
Viun9g02962 592 Gene3D HUPs 61 242 IPR014729 -
Viun9g02962 592 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 95 230 IPR006050 -
Viun9g02962 592 Gene3D - 243 412 - -
Viun9g02962 592 NCBIfam DASH family cryptochrome 96 538 IPR014133 GO:0003913|GO:0006281
Viun9g02962 592 PANTHER CRYPTOCHROME 95 553 IPR002081 -
Viun9g02962 592 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 312 548 IPR036134 -
Viun9g02962 592 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 413 567 - -
Viun9g02962 592 MobiDBLite consensus disorder prediction 570 592 - -
Viun9g02962 592 Pfam DNA photolyase 97 277 IPR006050 -
Viun9g02962 592 Pfam FAD binding domain of DNA photolyase 392 548 IPR005101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02962 Viun-Chr9 37616746 37621325 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02962 K25656 - gmx:100783312 1045.03