Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02908 ATGGGGATAGCAGAAGTGTGCTCCAGGTTCATTGGGGACTTTTTACAAACACTTAAAAGCTCGCCAAAGAGGTCAGAGTCTTCTGACCTTGATGAGAGTGAGCATGCATGCAAAGGTGGGAGGATGGTGAAGCTGGACGAGAAGATGGTGGGTGCCCTGGTAACAGTTTTTGGCATGGAGAGCAATGGAAGAATCAAGAAGGAGAGTGCAAGGGAAGTGGTGGAGAAGCTTGGTTTGGGTTCAGGAACAGGGTTTGAGCTTGGTGAGTTGATGGATGATGAAGTGCCTGTGGAAGAGGTGCTTGGGGAGTTGGAAGACGTGTCGAAGCGCAGTGAGTTGCTGCATGAAGCTTTCAAAATCTTTGATGAAGATGGAGATGGATACATTGATGCAATGGAGTTGAAGAGGGTGCTTGATTGCTTAGGTTTGGACAAGGGTTGGGATATGAATGCCATTGAAAACATGGTGAAGGTTGCAGATTTGAACTTCGATGGCAAGGTTGATTTTGGTGAGTTTGAATTCATGATGATGGGGTAG 537 0.4674 MGIAEVCSRFIGDFLQTLKSSPKRSESSDLDESEHACKGGRMVKLDEKMVGALVTVFGMESNGRIKKESAREVVEKLGLGSGTGFELGELMDDEVPVEEVLGELEDVSKRSELLHEAFKIFDEDGDGYIDAMELKRVLDCLGLDKGWDMNAIENMVKVADLNFDGKVDFGEFEFMMMG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02908 178 CDD EFh 114 177 IPR002048 GO:0005509
Viun9g02908 178 Pfam EF-hand domain pair 113 176 IPR002048 GO:0005509
Viun9g02908 178 SUPERFAMILY EF-hand 51 177 IPR011992 -
Viun9g02908 178 PANTHER CALCIUM BINDING PROTEIN 110 176 - -
Viun9g02908 178 FunFam Calmodulin A 94 178 - -
Viun9g02908 178 ProSitePatterns EF-hand calcium-binding domain. 122 134 IPR018247 -
Viun9g02908 178 ProSiteProfiles EF-hand calcium-binding domain profile. 109 144 IPR002048 GO:0005509
Viun9g02908 178 SMART efh_1 151 178 IPR002048 GO:0005509
Viun9g02908 178 SMART efh_1 113 141 IPR002048 GO:0005509
Viun9g02908 178 Gene3D - 12 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02908 Viun-Chr9 37314750 37315503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02908 114 176 EF-hand Containing Proteins AT4G20780 55.556 1.26e-15 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02908 - - var:108321834 305.834