LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun9g02858	ATGGCGAACCAGGACTACGAAGAGCGCCAACAAACGCAGGAGCTCGGGTACGACCCGAACTTCGTTCCGGACTCTGTGAAATCGTTCGTGGTTCACCTGTACCGTCACATCCGCGAGAAGAACGTGTACGAGATCCACCAGATGTACGAGAGCTCGTTCCAGACCCTGTCGGAGCGGCTCTTCAAGGACACGCCGTGGCCCTCCGTGGACGCCGTGGCGCATTACGTGGACAACGACCACGTTTTTTGCCTCCTCTACCGCGAGATGTGGTTCCGTCACCTCTACGCGCGCCTCACGCCCACGCTCCGCCAGCGCATCGATTCCTGGGACAATTACTGCAGCCTTTTCCAGGTGGTCCTCCACGGCGTCGTAAACATGCAGCTCCCCAACCAGTGGCTGTGGGACATGGTCGACGAGTTCGTCTACCAGTTCCAGAGCTTCTGCCAATACCGTGCCAAGATGAAGAACAAGACCGAACAGGAGATCGCGCTATTGCGCCAGTTCGACCAGGCCTGGAATGTGTATGGGGTTTTGAACTTCCTTCAGGCGCTGGTGGAGAAGAGTACCATTATTCAGATTCTGGAGCAGGAGAAGGAGGGGCTCGAGCAGTTTACTGCCACGGATGGGTATGATTACAATGGGGGGAGTAATGTGTTGAAGGTTCTGGGGTATTTTAGTATGGTGGGGTTGCTTAGGGTTCATTGCTTGCTGGGGGATTATCATACTGGGATCAAGTGCTTGCTCCCTATTGATATTAGTCAGCAAGGGGTTTATACCAGTGTTATTGGGAGTCACATCACCACCATTTATCACTATGGTTTTGCCAATCTCATGCTCCGCAGATATGTGGAAGCAATTCGAGAATTTAACAAAATTCTCTTGTACATCTTCAAGACAAAACAGTATCACCAGAAATCACCCCAATATGAGCAGATATTGAAGAAAAATGAACAAATGTATGCCTTGCTGGCAATTTGTCTTTCACTTTGTCCCCAAACCAGGCTTGTTGATGAAACTGTGAACTCTCAGTTGCGGGAGAAGTATGGTGAAAAGATGGCTAGAATGCAGCGATATGACGATGAGGCATTTGCTATCTATGATGAGCTCTTCTCGTATGCATGCCCTAAGTTCATCACCCCTTCAGCTCCTAGTTTTGAGGAGCCTCTTGTAAATTATAATCAGGATGCCTATAGACTTCAATTAAAACTGTTCCTTTATGAAGCAAAGCAGCAACAATTATTATCAGGTGTCCGGACCTTCTTGAAAGTGTATTCCACAATCTCCCTTGCAAAACTTGCGAGTTACATGGAAGTCGATGAACCTACCTTAAGGACTATCTTGATGACATACAAGCACAAGACACACGCTGTTGATAGTGATGGGAAAATTACATCCAATGCCGATGTAGATTTCTATATCGATGAGGACACAATTCATGTTGTGGAGTCCAAGCCTGCGAAACGTTATGGTGATTACTTTTTGCGTCAGATTGTCAAGCTTGAAGGGGTGATCAATGAGATGGACGGTATAAAGCTGGATTGA	1542	0.4786	MANQDYEERQQTQELGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYESSFQTLSERLFKDTPWPSVDAVAHYVDNDHVFCLLYREMWFRHLYARLTPTLRQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQYRAKMKNKTEQEIALLRQFDQAWNVYGVLNFLQALVEKSTIIQILEQEKEGLEQFTATDGYDYNGGSNVLKVLGYFSMVGLLRVHCLLGDYHTGIKCLLPIDISQQGVYTSVIGSHITTIYHYGFANLMLRRYVEAIREFNKILLYIFKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQTRLVDETVNSQLREKYGEKMARMQRYDDEAFAIYDELFSYACPKFITPSAPSFEEPLVNYNQDAYRLQLKLFLYEAKQQQLLSGVRTFLKVYSTISLAKLASYMEVDEPTLRTILMTYKHKTHAVDSDGKITSNADVDFYIDEDTIHVVESKPAKRYGDYFLRQIVKLEGVINEMDGIKLD	513

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun9g02858	513	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3	5	510	IPR019382	GO:0003743\|GO:0005737\|GO:0005852
	Viun9g02858	513	ProSiteProfiles	PCI domain profile.	288	487	IPR000717	-
	Viun9g02858	513	Pfam	RNA polymerase I-associated factor PAF67	104	499	IPR019382	GO:0003743\|GO:0005737\|GO:0005852
	Viun9g02858	513	Coils	Coil	341	361	-	-
	Viun9g02858	513	Hamap	Eukaryotic translation initiation factor 3 subunit L [EIF3L].	6	502	IPR019382	GO:0003743\|GO:0005737\|GO:0005852

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun9g02858	K15029		-	gmx:100804691	1017.3

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun9g02858	9	37008451	37011851	Viun9g02858	9	37008451	37011851	ECH