Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02802 ATGTACATACTTTGGGATAAACAGCGTGTGTCGTGGCTTTGTGAGTTCTCATCGGAAGCAATGGAGGACGCCGGGAAACCTCATAAGTCCGGCAACCCATCGCGTAAGGTGGTTGATTTGGCTGCCGGAGAAGCACACAATCTCATTCTTACTGGTGATGGCGGTGTTTACAGTTGGGGTAGGGGAATGTTTGGAAGGATTGGGAATGGCTCAGAAAAGGACGAGCTTTTTCCAGTGCAACTCAACTTTGGAAACGCAAACCCAAATGGAACACAAGACAATGTCAAGATCGTGGGAATTGCTGCTGGTGCTTATCATAGTCTCGCTCTTTCAGATGATGGAGCTGTTTGGTCTTGGGGTTACAATTTCTATGGTCAACTTGGTACAAATGTAGAGGAATCACATGACAATGAATATGATGTTGGAGACTATTGTTTAGTGCCCCGCTTACTGAACAGTTTTGTTGAATTGCACACTGTCAATTCTTCATCGGGTGTGTCTGAAACAGAAGCCAAAACATCACTTAAGATATGTGCTGTCAAAGCTGGAGGAATGATGTCTCTGGCCATTGATAACCGTGGAACCCTTTGGATGTGGGGAAACTGCCCACAACAAAGTAAAGAAGGTGAGTTAGCACTCGTAAGCAGTTTCACTCCAACTCCAGTTCTGGATTTTCTGGGTCGATCTGTTGTCAAGGTTGCATGTGGAAATGAGCATATCGTAGCACTGGTTAGTGCTGGCGGATCATACAATGGTGAAGATCTAGTATGCTACTCTTGGGGTTATAATACCCGTGGTCAATTAGGGTTGGGGGATAGAGAGAAGAGGCTGCATCCGGAAGTTGTTAAAACATTTGATGAGGAGTCACCCTATGAGGTGGCATGTGGCGCCTATCACACTGCTTTGCTCACTCGTGTAAAGAAAACTAGTGACACATTAGAGAGCACATGCTGGACCTTTGGCCTTGGAGATAATGGCCAACTTGGGCATGGAACAACACAAAGCACATTATTTCCTACACCTGTTAAAGAATTGCCACGAAATATATCCCTTATTTGTGTTGACTGTGGTTTGTTTCATACAAGCGTAGTTTCCTCAGATGGGGATGTGTGGTCATGGGGAATGGAGAAGGGTCTTGGCTTATGCCCTGATGCTAGTCGAGCTGGAACAGATTCTGGTGATGCACTGTCTCCCCGTCTTATGTCATGGAAGCCAAATCAACCTAAATTTCCAGATCCAGTTAAACTTGCATGTGGGGCAGCACATACTGTTATAATTGCGAAAGGGGGATATAGAATGTGGTCTTGGGGTAGGGGAAGAAGTGGAGTTCTTGGAGATGGTAAAGGAATAGATTGTTACACTCCCACGCTCGTACTATGGCCCCAAATGATGGAGGACTCTGAGGAAGAGGAAGTAAAAGGCGATGGTGAACAAGATAAGGCTAGAGAAAATGAGACTGAAGCAACAAATGAAGTAGAAGAGAAACTATCCTCAGCATTGAATGAGCTGAAGCTGCTTCAAACAAAGTTATCTGTGATTAGAAAATATGCCAGTATACTACATGGTTCTGTTTTTGGAAAGCCCTTTGATGAGCAAGATATCCCTGATTCGTTGCAGAATTCAGGTTCATTTGACATTGGAAAAGAATGGGAGAAGATGTTAGGGACTGCAGATCATAGGAAGCTAATTAGGTTGGAAATGTTTTACCGAGACATGCTTGCTGGAGTAAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATTGTAAAGGAGTGTCTCCAATCTTCAGAGGCGTAA 1797 0.4418 MYILWDKQRVSWLCEFSSEAMEDAGKPHKSGNPSRKVVDLAAGEAHNLILTGDGGVYSWGRGMFGRIGNGSEKDELFPVQLNFGNANPNGTQDNVKIVGIAAGAYHSLALSDDGAVWSWGYNFYGQLGTNVEESHDNEYDVGDYCLVPRLLNSFVELHTVNSSSGVSETEAKTSLKICAVKAGGMMSLAIDNRGTLWMWGNCPQQSKEGELALVSSFTPTPVLDFLGRSVVKVACGNEHIVALVSAGGSYNGEDLVCYSWGYNTRGQLGLGDREKRLHPEVVKTFDEESPYEVACGAYHTALLTRVKKTSDTLESTCWTFGLGDNGQLGHGTTQSTLFPTPVKELPRNISLICVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDASRAGTDSGDALSPRLMSWKPNQPKFPDPVKLACGAAHTVIIAKGGYRMWSWGRGRSGVLGDGKGIDCYTPTLVLWPQMMEDSEEEEVKGDGEQDKARENETEATNEVEEKLSSALNELKLLQTKLSVIRKYASILHGSVFGKPFDEQDIPDSLQNSGSFDIGKEWEKMLGTADHRKLIRLEMFYRDMLAGVKDELMKRRIKEIVKECLQSSEA 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02802 598 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 54 113 IPR000408 -
Viun9g02802 598 PRINTS Chromosome condensation regulator RCC1 signature 357 375 IPR000408 -
Viun9g02802 598 PRINTS Chromosome condensation regulator RCC1 signature 55 71 IPR000408 -
Viun9g02802 598 PRINTS Chromosome condensation regulator RCC1 signature 233 249 IPR000408 -
Viun9g02802 598 PRINTS Chromosome condensation regulator RCC1 signature 426 447 IPR000408 -
Viun9g02802 598 PRINTS Chromosome condensation regulator RCC1 signature 116 132 IPR000408 -
Viun9g02802 598 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 114 193 IPR000408 -
Viun9g02802 598 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 194 246 IPR000408 -
Viun9g02802 598 MobiDBLite consensus disorder prediction 465 490 - -
Viun9g02802 598 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 100 110 IPR000408 -
Viun9g02802 598 Coils Coil 482 509 - -
Viun9g02802 598 SUPERFAMILY RCC1/BLIP-II 32 458 IPR009091 -
Viun9g02802 598 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 429 IPR000408 -
Viun9g02802 598 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 293 303 IPR000408 -
Viun9g02802 598 Pfam Regulator of chromosome condensation (RCC1) repeat 53 110 IPR000408 -
Viun9g02802 598 Pfam Regulator of chromosome condensation (RCC1) repeat 317 363 IPR000408 -
Viun9g02802 598 Pfam Regulator of chromosome condensation (RCC1) repeat 258 303 IPR000408 -
Viun9g02802 598 Pfam Regulator of chromosome condensation (RCC1) repeat 367 426 IPR000408 -
Viun9g02802 598 Pfam Regulator of chromosome condensation (RCC1) repeat 113 190 IPR000408 -
Viun9g02802 598 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 233 243 IPR000408 -
Viun9g02802 598 Gene3D - 15 253 IPR009091 -
Viun9g02802 598 Gene3D - 254 491 IPR009091 -
Viun9g02802 598 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 315 367 IPR000408 -
Viun9g02802 598 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 35 152 - -
Viun9g02802 598 MobiDBLite consensus disorder prediction 474 490 - -
Viun9g02802 598 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 255 306 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02802 Viun-Chr9 36683846 36686923 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02802 - - gmx:100815199 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02802 9 36683846 36686923 Viun9g02802 9 36683846 36686923 ECH