Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02772 ATGGCGGTTTCCGATAGTCCAAGCGGTGCCTCCACGCCGCCTCAACAGGAACCAGCCAACAAGTACGGTTTCACCAAGCCTCTCTCTCTCGCGGGTCCCACCGACGCTGATCTCAACCGTAACAACGAATTGGAGAAGTTCTTGCTCGATTCGGGGCTCTACGAGAGCAATGATGAGTCCGCCGCGAGGAAGGAGGTTCTTCACCGCCTCGATCAGATTGTGAAAACCTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTGGAGGATGCAAACGCAGTCATTTTCACTTTTGGTTCTTACCGACTAGGGGTTCATGGACCTGGAGTTGACATTGACACTCTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTCTTCATCATTTTGCATAACATTCTGGCTGAAATGGAAGAAGTTTCTGAACTACAACCGGTTCCTGATGCACATGTTCCAGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCACTTTTGGTTGTGCCAGAAGACCTAGATATCTCTCATGGTTCAGTGCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAAACTTGTTCCAAATATTGAGCACTTTCGAACTACACTGAGATGCTTGAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATATGCCAACTTTACCCTAATGCAATACCTAGTATGTTGGTTTCCCGGTTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTGGGATTCCCTATATGGGATCCTCGTAGAAATCCCCGAGATAGATTTCACACTATGCCAATAATTACTCCTGCATACCCTTGCATGAATTCAAGTTACAATGTCTCAGCAAGCACTCTTCGTGTCATGATGGAACAGTTCCGCTATGGCAATAAGATTTGTGATGAAATTGACCTCAATAAAGCCCAGTGGAGCGCACTTTTTCAGCCTTATGTCTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAGTTGCATCGGACACTGATGATTTACTAGCATGGAAGGGCTGGGTAGAATCTCGATTGAGGCTGCTTACCCTTAAGATAGAGCGAGATACAAATGGAATGCTGCAGTGCCATCCTTACCCACATGAGTATATAGACACATCCAAACCATGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGGAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAATTTGATATACGTGGAACCGTTGATGAATTCAGACAAGAAATAAATATGTATATCTACTGGAAGCCTGGAATGGAAATTTTTGTTTCTCATGTTCGTCGAAAGCAACTTCCTGCATTTGTTTTTCCTGATGGTTACAAACGCACTAGAATGCCAAGACACATAAGCCATCCAACTGAAAAAACAGGTGATGATGCCACAAAGTGCTACTCTGGATCTGGGCCATCTGAAAGATGCACCAAGAGGAAAAGTTACCCTGAAATGGTGGAAAAGAAGCCAGACAAACCAGATAAACGGGCATCCATTAGCCCACAGAGGTTAGAATGTGTTTCTCCTGAAAGTTGTACTAGTAAATCAGGTGGTTCAGCTCAAATGAGTATTGATAGTATGGAAGGGGTTTGGGTAGCTGGTTCAACAACCAAGTATGCTAACAGCAATTGTGAAATTAAGTCATCTGATGTGCTCCCAGGAAGTGGACTAAGCTCTGTGGTAGCTGACATGCAGATTAGTGAACCAGGCTTTGTTGACACCACACATGATATGTTGAAAACGAGGAGTGTAGAAGTTCCTAATGAGAATGGAGTTGTCGATGGGGACAAAGCTCAGGATCTGACTTTAGATTGCCTGGAAAGTGAAGAAAGTGAATCTACTAACCATTTTTCAAACTGTAAAGCGGGTGTTGTCGATATGGATCAGCAACTAGACAAAGCATGTAATTTCATCACAAGGGATGAATGCTCAGATTATGTACCAAATGCCAGCTCCCAGAACCTCAGTTGCGAGATTTCAGACTCAGAAGTGTTGTAA 2166 0.4367 MAVSDSPSGASTPPQQEPANKYGFTKPLSLAGPTDADLNRNNELEKFLLDSGLYESNDESAARKEVLHRLDQIVKTWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFIILHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNIEHFRTTLRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIDLNKAQWSALFQPYVFFEAYKNYLQVDIVASDTDDLLAWKGWVESRLRLLTLKIERDTNGMLQCHPYPHEYIDTSKPCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYIYWKPGMEIFVSHVRRKQLPAFVFPDGYKRTRMPRHISHPTEKTGDDATKCYSGSGPSERCTKRKSYPEMVEKKPDKPDKRASISPQRLECVSPESCTSKSGGSAQMSIDSMEGVWVAGSTTKYANSNCEIKSSDVLPGSGLSSVVADMQISEPGFVDTTHDMLKTRSVEVPNENGVVDGDKAQDLTLDCLESEESESTNHFSNCKAGVVDMDQQLDKACNFITRDECSDYVPNASSQNLSCEISDSEVL 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02772 721 CDD NT_PAP_TUTase 62 217 - -
Viun9g02772 721 MobiDBLite consensus disorder prediction 1 37 - -
Viun9g02772 721 Pfam Poly(A) polymerase predicted RNA binding domain 432 502 IPR007010 GO:0003723|GO:0043631
Viun9g02772 721 Pfam Poly(A) polymerase predicted RNA binding domain 370 427 IPR007010 GO:0003723|GO:0043631
Viun9g02772 721 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 370 496 IPR011068 GO:0003723|GO:0016779|GO:0031123
Viun9g02772 721 MobiDBLite consensus disorder prediction 533 555 - -
Viun9g02772 721 MobiDBLite consensus disorder prediction 560 576 - -
Viun9g02772 721 SUPERFAMILY PAP/OAS1 substrate-binding domain 218 367 - -
Viun9g02772 721 SUPERFAMILY Nucleotidyltransferase 19 216 IPR043519 -
Viun9g02772 721 MobiDBLite consensus disorder prediction 1 19 - -
Viun9g02772 721 FunFam Nuclear poly(A) polymerase 4 369 485 - -
Viun9g02772 721 Gene3D Beta Polymerase, domain 2 55 211 IPR043519 -
Viun9g02772 721 Gene3D Poly(A) polymerase predicted RNA binding domain 369 485 - -
Viun9g02772 721 FunFam Poly(A) polymerase alpha, putative 55 211 - -
Viun9g02772 721 Pfam Nucleotidyltransferase domain 96 172 IPR002934 GO:0016779
Viun9g02772 721 Gene3D - 23 365 - -
Viun9g02772 721 Pfam Poly(A) polymerase central domain 23 366 IPR007012 GO:0043631|GO:1990817
Viun9g02772 721 FunFam Putative poly(A) polymerase gamma 197 365 - -
Viun9g02772 721 PANTHER POLY A POLYMERASE 12 551 - -
Viun9g02772 721 MobiDBLite consensus disorder prediction 507 576 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02772 Viun-Chr9 36457246 36463077 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02772 K14376 - gmx:100802620 1349.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02772 9 36457246 36463077 Viun9g02772 9 36457246 36463077 ECH