Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02746 ATGGCGTCTTCTAAGAGGCCAAATGCAGAGCCCAACGGGAAAGGGAAACGCCAAAAATCTTCCGGTGGATTTTCGTCGTTGGATGTTTCTCCAGGGAGTGCCGTGTTCCGTTTGCTCTGTCCCGTTTCAAGAATTGGCAGTGTTATTGGCAAAGGTGGTGCCATCATTTCACAAATTCGCCAAGAAAGTGGTGTGAAGGTTAAGATTGAGGAAGCTATACCTGGGTGTGATGAAAGGGTTATCACTATCTCAGGTTCTGATAAAGAAGCTGAAGAAGCTCATGCAGAGCAGGTAAAGGAGGTTAACAATGATGATGCTGGAATCGAGGGGAAAGGGGACGAGGAGGAGAGGGATGGTGGTGATGGTGATGCCAATGAAGAGAAAGAAGATAAAAGTTCGGTTCTCGTTCAAGATTCTCCCAGTGAAAAAGGGAATTCGGCCATTCGGAAGGCTATATCATTAGTTTTTGAGAGAATGGTTGAGGGAGTAGAAGAGACGAGTGAAGGGGATGAAGAAAGTAATAAATCTTCTTCCCTTGTTTTTAGGTTACTTATTCTTACTACTCAAGTTGGATGCCTTCTGGGAAAGGGTGGTAGTGTGATTAAGAGAATGGCAGCTGAAAGTGGTGCACATATTCGGATCCTTCCAAAAGACAAACTTCCAGCGTGTGCATCAGCTTCTGATGAGATAGTTCAGATCTCAGGAGGAGTAGATGTTGTCAGGAAAGCTCTTCAATCTGTTTCTCATCAACTATTGGAAAATCCACCACGGGATCATGAGTTGTCCACCAATTTTAACGGGCCTTCTCATTCATCTGGTCAATTCCCATCTCACAGCCGGTCTTTTGGTGGTCAAGGAGTACCTTTTGGTGCTGCCCATGATATTTCTGTTTTTCATTCTGCCCCTCCATTGATTTCCAAGTTTCACGAAGCTGCCATTCATGGTCGCACTAGACCTATGCAGGAAATGCTTACTTTTCGTTTATTGTGTCCTGTGGAAAGGGTAGGAAATGTAATTGGTAAAGGTGGAACAATCATAAAGACACTTCAGCAAGAGACAGTAAGTGAAATCAAGATTGTAGAAAGTCCTCCAGATTCAGATGATTGTGTTATTGTTATATCTGGCCCAGCGCACCCAGAAGATAGAGTATCCCCTGTGCAAGAGGCTGTATTTCGAGTGCAAACTAGAATAGCCAAGCCTATACCTGATGCCAAAGAACATACTATGTTAGCAAGGTTTCTTGTTTCTTCCAATCAAATAGGCTGTCTCCTCGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGAAATCAGGGGCCCATATCCGAATATTAGGAAAGGATAAGGTTCCAAAGTGTGCTTCAGAAGATGAAGAAGTAATTCAGGTAAATGGAGAAATTGAGGCAGTGCATGATGCTCTTATGCAAATAACTACTAGATTAAGACATCATTTCTTTCGTGATTCACATCCATCTGTCAATTATCCTTCAAATTCTCCATTTGTGGATCAACTTCCTCCATTCCCACCTTATTTAGGAAGACGGGGACTGTCACCTCCTGGGATGTTTTCTGACCTTGGTCCTCCACCTTATGCGGGTTTTCCTCTTGATGACCGTCCTCCATTTCTGAATAATATACACAGACCAGGCATTCCTCCTCACATATCGGAAAGGAAGCTTTGGGGTCCTCAGGGGGTACTTGAAGGTGGCTCCCGCATTGGCTTGCCAGACTTTCCAGGAGGTCCTCCTAGAAGAATTTCAGGATTTGCAGGGGGGAGCCAACCAATTATCACAAGTACCACTGTTGAAGTTGTTGTTCCTCGAGCACTGGTGCCTGTAATATATGGGGAAGACGGTGAATGCCTGAAACAAATACTTCAGATCTCTGATGCAAATATTACTATAACTGATCCAAAGCCCGGAGCTGTGGAAACTAAAATTATAATATCTGGAACCCCTGAGCAAACTCATGCAGCCCAAAGTCTTATTCAGGCATTTGTCATGAGTGAGAGGGAGTCTGGTTGA 2025 0.441 MASSKRPNAEPNGKGKRQKSSGGFSSLDVSPGSAVFRLLCPVSRIGSVIGKGGAIISQIRQESGVKVKIEEAIPGCDERVITISGSDKEAEEAHAEQVKEVNNDDAGIEGKGDEEERDGGDGDANEEKEDKSSVLVQDSPSEKGNSAIRKAISLVFERMVEGVEETSEGDEESNKSSSLVFRLLILTTQVGCLLGKGGSVIKRMAAESGAHIRILPKDKLPACASASDEIVQISGGVDVVRKALQSVSHQLLENPPRDHELSTNFNGPSHSSGQFPSHSRSFGGQGVPFGAAHDISVFHSAPPLISKFHEAAIHGRTRPMQEMLTFRLLCPVERVGNVIGKGGTIIKTLQQETVSEIKIVESPPDSDDCVIVISGPAHPEDRVSPVQEAVFRVQTRIAKPIPDAKEHTMLARFLVSSNQIGCLLGKGGSIITEMRKKSGAHIRILGKDKVPKCASEDEEVIQVNGEIEAVHDALMQITTRLRHHFFRDSHPSVNYPSNSPFVDQLPPFPPYLGRRGLSPPGMFSDLGPPPYAGFPLDDRPPFLNNIHRPGIPPHISERKLWGPQGVLEGGSRIGLPDFPGGPPRRISGFAGGSQPIITSTTVEVVVPRALVPVIYGEDGECLKQILQISDANITITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERESG 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02746 674 ProSiteProfiles Type-1 KH domain profile. 33 97 - -
Viun9g02746 674 SMART kh_6 322 398 IPR004087 GO:0003676
Viun9g02746 674 SMART kh_6 598 668 IPR004087 GO:0003676
Viun9g02746 674 SMART kh_6 177 252 IPR004087 GO:0003676
Viun9g02746 674 SMART kh_6 407 482 IPR004087 GO:0003676
Viun9g02746 674 SMART kh_6 32 102 IPR004087 GO:0003676
Viun9g02746 674 Gene3D K Homology domain, type 1 598 671 IPR036612 GO:0003723
Viun9g02746 674 MobiDBLite consensus disorder prediction 86 145 - -
Viun9g02746 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 168 258 IPR036612 GO:0003723
Viun9g02746 674 MobiDBLite consensus disorder prediction 1 29 - -
Viun9g02746 674 MobiDBLite consensus disorder prediction 14 28 - -
Viun9g02746 674 MobiDBLite consensus disorder prediction 252 280 - -
Viun9g02746 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 599 668 IPR036612 GO:0003723
Viun9g02746 674 Gene3D K Homology domain, type 1 33 104 IPR036612 GO:0003723
Viun9g02746 674 Gene3D K Homology domain, type 1 406 485 IPR036612 GO:0003723
Viun9g02746 674 Gene3D K Homology domain, type 1 175 255 IPR036612 GO:0003723
Viun9g02746 674 CDD KH-I_PEPPER_rpt1_like 35 95 - -
Viun9g02746 674 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 320 663 - -
Viun9g02746 674 CDD KH-I_PEPPER_rpt2_like 410 482 - -
Viun9g02746 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 404 486 IPR036612 GO:0003723
Viun9g02746 674 CDD KH-I_PEPPER_rpt1_like 324 391 - -
Viun9g02746 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 30 95 IPR036612 GO:0003723
Viun9g02746 674 Pfam KH domain 325 377 IPR004088 GO:0003723
Viun9g02746 674 Pfam KH domain 182 247 IPR004088 GO:0003723
Viun9g02746 674 Pfam KH domain 412 477 IPR004088 GO:0003723
Viun9g02746 674 Pfam KH domain 601 664 IPR004088 GO:0003723
Viun9g02746 674 Pfam KH domain 36 95 IPR004088 GO:0003723
Viun9g02746 674 CDD KH-I_PEPPER_rpt2_like 180 248 - -
Viun9g02746 674 ProSiteProfiles Type-1 KH domain profile. 599 663 - -
Viun9g02746 674 MobiDBLite consensus disorder prediction 86 136 - -
Viun9g02746 674 ProSiteProfiles Type-1 KH domain profile. 178 247 - -
Viun9g02746 674 ProSiteProfiles Type-1 KH domain profile. 408 477 - -
Viun9g02746 674 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 323 408 IPR036612 GO:0003723
Viun9g02746 674 Gene3D K Homology domain, type 1 322 400 IPR036612 GO:0003723
Viun9g02746 674 ProSiteProfiles Type-1 KH domain profile. 323 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02746 Viun-Chr9 36277100 36282230 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02746 K21444 - gmx:100777433 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02746 9 36277100 36282230 Viun9g02746 9 36277100 36282230 ECH