Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02623 ATGGCGAACCACCCCCTCTCCGCCGGAATAAGACGTTTTGTGTTCGGGGCACGAACTCTTTGCAGCACCGTTGCTTCACGCGCTTCGACGTTGCACGCGCCGTTATTGCGCAAGCTCAAGTCCCCAAAGCAGAATCCATTGCTGGTGCTTCAAAATTGGGTGGACGAAGGCAACAATGTTTCACCCTCCCAGTTCAGAAGCATCGCCAGAACCCTAGTCAAATCGAAGCGCTACCACCACGCCCTTGAGTTATTTAAGTGGATAGAAAATCAGAAGAATTTCCGTATGATCCCAGTTGATCATGCTATGAAATTGGAGTTAATCATTGAAAATTATGGTTTAATGGAAGCTGAAGAATATTTTATGAATCTACCTGACTCGGCTGCAAAGAAGGCGGCTTATCTCGGGCTTCTTCGTGGATATGTAAGATATAGGGATACCACTAAGGCTGAGGCTTTAATGGTGAAGCTCTATGATTTGGGGCTAGTTGCGAGTCCTCACCCTTTTAATGAGATGATGAAGCTGTATCTACTGACCTGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGGAATAAAATACCCTGCAATGTTCTCTCCTACAATCTTTGGATGAATGCCTGTAGTGAGGAAGAAGGGTACGGGATTGCTGCAGTAGAGACAGTTTTTAGACAAATGCAGAATGACAAGAACGTTGAAGTGGGATGGAGCAGTCTTGCCACATTAGCCAATGTTTACAAGAAAGCAGAGCAACCTAAGAAAGCCATTCTGGTTCTCAAAGATGCTGAAAAGAAACTATCTACATGTAATCGTCTCGGTTACTTCTTCCTCATAACACTATATGCTTCTTTGAAGGATAAGGAGGGAGTCTTGCGGTTATGGGAAGCTAGTAAGGCAGTTGGTGAAAGAATCAGTTGTGCTAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGGGACATTCTACAAGCCGAGAGAATCTTCTCAGAATGGGAATCTAATTGTCAGAAGTATGATATCAGAGTTTCTAATGTTCTTTTGGGTGCATATGTGAGGGATGGATTAATGGAAGAAGCTGAATCATTACATCTCCACACATTGCAAAAGGGTGGTTGTCCAAACTATAAGACAATGGAAATTCTTGTAGAAGGATATGTGAATAGGAAAAAAATAGACGAGGCTATAATTGCAATGAAAAGAGCTTTGTCTATGACAAAAAATTGTCATTGGAGGCCACCACATGGACTTATGTTGGCTATTGTGGAGAGTTTGGAGAAAGATGGGAATCTTGAATATGCCAATAAGTATATTACAGATATCCATAATTTTGGTCTTGCTAGTTTACCATTGTATAAAATATTACTAAGAATGCACCTTTATGCCAACAAACCACCTTTCCATATCCTTAAAATGATGGATGAAGAGAAGGTTGAGATGGATGATGAGACACATTCCATTGTTAAAGCTTTCACTTTGCCAAAAAATTCCGAGGTGGAGCGGTAA 1515 0.4172 MANHPLSAGIRRFVFGARTLCSTVASRASTLHAPLLRKLKSPKQNPLLVLQNWVDEGNNVSPSQFRSIARTLVKSKRYHHALELFKWIENQKNFRMIPVDHAMKLELIIENYGLMEAEEYFMNLPDSAAKKAAYLGLLRGYVRYRDTTKAEALMVKLYDLGLVASPHPFNEMMKLYLLTCEYRKVPLVIQQMKRNKIPCNVLSYNLWMNACSEEEGYGIAAVETVFRQMQNDKNVEVGWSSLATLANVYKKAEQPKKAILVLKDAEKKLSTCNRLGYFFLITLYASLKDKEGVLRLWEASKAVGERISCANYICILTCLVKLGDILQAERIFSEWESNCQKYDIRVSNVLLGAYVRDGLMEEAESLHLHTLQKGGCPNYKTMEILVEGYVNRKKIDEAIIAMKRALSMTKNCHWRPPHGLMLAIVESLEKDGNLEYANKYITDIHNFGLASLPLYKILLRMHLYANKPPFHILKMMDEEKVEMDDETHSIVKAFTLPKNSEVER 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02623 504 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Viun9g02623 504 Pfam Pentatricopeptide repeat domain 169 212 IPR002885 -
Viun9g02623 504 PANTHER OS12G0527900 PROTEIN 29 481 - -
Viun9g02623 504 Gene3D Tetratricopeptide repeat domain 34 219 IPR011990 GO:0005515
Viun9g02623 504 Pfam PPR repeat 348 367 IPR002885 -
Viun9g02623 504 Gene3D Tetratricopeptide repeat domain 241 416 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02623 Viun-Chr9 35258009 35263160 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02623 39 435 EF-hand Containing Proteins AT1G02150 33.012 6.56e-76 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02623 - - gmx:100813805 843.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02623 9 35258009 35263160 Viun9g02623 9 35258009 35263160 ECH