Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02552 ATGGAGCACTTCAACAACGACGATCTTGAGTACGTCGGCGACCACTACTACGACGACGTTTCTGATTTCCATGGCCACACCTCCGGCGACATTCTTCCTCAGCAACCCTCCCATGCCGACTCCCACGACTCTGACTTTGACTTTGACGACGAAGATCTCCTAACCAGTAATGCAAAGACTGATACCACCGCTTCTGAAGCCAGAAACGGGAAGGACATCCAGGGAATCCCCTGGGAGAGGCTCAATTATAGCAGAGACAAGTACCGCGAGACTCGATTGAAGCAGTATAAGAATTACGAGAGCCTCTCCCGTTCACGCAACCACCTTCATAAGGAGTGCTTGAACGTGCAGAAGGGGAAGACCTTCTATGACTTCTTCTTCAATACCAGGCTCGTCAAATCCACAATTGTGCATTTTCAGCTGAGGAACTTGTTGTGGGCAACTTCGAAGCATGATGTATACCTTATGCAAAACTACTCAGTGATGCACTGGTCCGCAGTATTACGAAGGGCTAAAGAAGTGCTTAACGTAGCCAAACCAATTGTTCCAAGTCTGCGTCCTGGATTTTTAGCTCAGCCAGTCTCTAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCATGGTGAGCTTATATGCAAGAATTTGAAGAAGCCTGGAGTTCTATTTTGTGGTAAAATAACTACAGATGATAATGCCATAACCAATGCTGTGGACGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTCATGACAGCAAATAATGATTCCCAAGTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAACTATGATTGGTCTGTTAATAATATTTCGGCTAGCCCGGATGGGAAGTTGTTAGCTGTACTTGGGGACAGTACAGAGTGCTTGATAGCTGATGCTAACACTGGAAAGATTACTGGAAGCTTAAAAGGTCACTTGGACTACTCTTTTGCATCGGCGTGGCATCCAGATGGACGGATATTAGCTACTGGGAACCAGGACACAACTTGCAGGTTGTGGGACATAAGAAATCTTTCACAGTCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCCTTAAGATTCACCTCTGATGGACGGTTTTTGGCCATGGCTGAGCCTGCAGACTTCGTCCATGTTTTTGACTCTCATTCTGGTTATGTAGAAGGTCAAGAGATAGATCTATTTGGCGAGATTGCTGGTATATCCTTTAGCCCAGACACAGAGGCTCTATTTGTGGGCATTGCTGACAGAACCTATGGTAGCTTGTTAGAGTTCGTCAGAAAACGTTACAATTATTACCTGGACTCCTTTTTTTAG 1362 0.4552 MEHFNNDDLEYVGDHYYDDVSDFHGHTSGDILPQQPSHADSHDSDFDFDDEDLLTSNAKTDTTASEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYESLSRSRNHLHKECLNVQKGKTFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSAVLRRAKEVLNVAKPIVPSLRPGFLAQPVSRVQISTMTVKENLMVAGGFHGELICKNLKKPGVLFCGKITTDDNAITNAVDVYRNPAGSLRVMTANNDSQVRVFDAENFASLGCFNYDWSVNNISASPDGKLLAVLGDSTECLIADANTGKITGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHVFDSHSGYVEGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFVRKRYNYYLDSFF 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02552 453 Gene3D - 233 442 IPR015943 GO:0005515
Viun9g02552 453 Pfam WD domain, G-beta repeat 316 353 IPR001680 GO:0005515
Viun9g02552 453 SMART WD40_4 357 396 IPR001680 GO:0005515
Viun9g02552 453 SMART WD40_4 273 311 IPR001680 GO:0005515
Viun9g02552 453 SMART WD40_4 314 353 IPR001680 GO:0005515
Viun9g02552 453 ProSiteProfiles Trp-Asp (WD) repeats profile. 321 362 IPR001680 GO:0005515
Viun9g02552 453 SUPERFAMILY WD40 repeat-like 193 433 IPR036322 GO:0005515
Viun9g02552 453 ProSitePatterns Trp-Asp (WD) repeats signature. 340 354 IPR019775 -
Viun9g02552 453 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 6 450 - -
Viun9g02552 453 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 321 356 - -
Viun9g02552 453 FunFam WD-40 repeat family protein 234 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02552 Viun-Chr9 34583551 34588467 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02552 240 433 Miscellaneous Gene Families AT5G08390 26.531 8.33e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02552 - - gmx:100775453 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02552 9 34583551 34588467 Viun9g02552 9 34583551 34588467 ECH