Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02538 ATGGCTGCTCTCCGCACTGTGCTTCGTCATATTAACACGTGCGCCACCTTCGCTCCACCGCCGCGCCTTCCTATGGCATTGCTTTTGAGTTGTGGCGTCACGTGGCACTATCTTATTCCCTCCAAAACCTCCAGAACCGTTAAATCCCGTGCTGGCTCAGACAGTTACAAGTTAGTGGTGAAGAAAGACGAAAGGTTGGGAGCGGGAGAGTGTGTCGACGAGGTTGTTGGGAGTGGGACCACAATTGCGGCCATCGTAACTTCGTTGGGAGGGCCACCTGCAGCCGTTGGAATCGTTCGGCTTTCGGGCCCTGGAGCAGTGTCTATTGCGGGTCGGGTGTTCCGGCCCGCCCGGAACTCGTGGCGGCCCACCAGCCACGTCGTCGAATACGGCGTCGTGTTGGACTCCGATGGCAACGTCATCGATGAGGTCTTGGCGGTGCCGATGCTGGCTCCGAGGTCGTACACGCGCGAAGATGTGGTGGAGCTTCAGTGTCACGGGAGCGAAGTGTGTCTGCGCCGCGTTCTAAGGACTTGTTTGGAAGCCGGAGCAACGCTTGCTCAACCAGGCGAGTTTACTCTTCGCGCTTTTCTTAACGGTCGTTTGGATCTCTCACAAGCCGAAAATGTTGCAAGATTAATCGCCGCCAAATCTGTGGCGGCTGCAGATGCTGCACTGCAAGGAATTCAGGGTGGTTTTTCTTCTCTTGTTCGATCTTTGAGGAGTCAGTGCATTGAGTTGCTTACTGAGATTGAAGCACGTTTAGACTTCGATGATGAGATGCCGCCTCTGGATTTGAATCTGATTATGGATAAAATCCATGATATGTCACGAGACGTTGAGAATGCATTGGAGACTGCAAACTATGACAAGCTTCTGCAGTCTGGATTGCAGATAGCTATTGTTGGCCGCCCGAATGTTGGCAAGTCAAGCCTTCTGAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGCATCAGTGTCAGTGGTATTCCTATAACCCTCCTTGATACAGCAGGCATCAGGGACACTGATGACATTGTGGAAAAGATCGGCGTAGAGCGATCTGAAGCCGTTGCTAGGGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGTTGGACATGTGAAGACACCAAACTTCTCCAAAGGATTCAATCCACCAAGGAATCAACTGGATCATCCACCCCAGTAATCCTTGTGGTCAACAAGATAGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATTTCAGAGTCATAAAATTTTCAGCAAACATGTGTTTACATGTGCTGTTACTGGTCAAGGATTACTAGACTTAGAGAGGGCGGTATTACAGATTGTGGGTCTTGAAGGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGCAAGGTTACAATCATCAATAAAGGAGGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGTGGAGAAAATATATCGGAGGAGGTTTTATCAAATATATTTGGCAAGTTCTGTATTGGTAAGTAG 1638 0.4915 MAALRTVLRHINTCATFAPPPRLPMALLLSCGVTWHYLIPSKTSRTVKSRAGSDSYKLVVKKDERLGAGECVDEVVGSGTTIAAIVTSLGGPPAAVGIVRLSGPGAVSIAGRVFRPARNSWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGSEVCLRRVLRTCLEAGATLAQPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALQGIQGGFSSLVRSLRSQCIELLTEIEARLDFDDEMPPLDLNLIMDKIHDMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVSGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTCEDTKLLQRIQSTKESTGSSTPVILVVNKIDCKPCAETEWDKGFQSHKIFSKHVFTCAVTGQGLLDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAALSLGQISGENISEEVLSNIFGKFCIGK 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02538 545 Pfam MnmE helical domain 204 542 IPR025867 -
Viun9g02538 545 Pfam 50S ribosome-binding GTPase 298 419 IPR006073 GO:0005525
Viun9g02538 545 CDD TrmE_N 81 200 IPR018948 -
Viun9g02538 545 NCBIfam tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE 94 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Viun9g02538 545 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 296 466 IPR031168 -
Viun9g02538 545 Gene3D tRNA modification GTPase MnmE domain 2 202 545 IPR027368 -
Viun9g02538 545 Hamap tRNA modification GTPase MnmE [mnmE]. 80 545 IPR004520 GO:0003924|GO:0005525|GO:0006400
Viun9g02538 545 Gene3D - 297 473 IPR027417 -
Viun9g02538 545 PANTHER TRNA MODIFICATION GTPASE GTPBP3 63 545 - -
Viun9g02538 545 CDD trmE 294 466 IPR031168 -
Viun9g02538 545 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 461 IPR027417 -
Viun9g02538 545 FunFam tRNA modification GTPase MnmE 76 201 - -
Viun9g02538 545 Gene3D Probable tRNA modification gtpase trme; domain 1 71 201 IPR027266 GO:0005515
Viun9g02538 545 NCBIfam small GTP-binding protein domain 297 427 IPR005225 GO:0005525
Viun9g02538 545 FunFam tRNA modification GTPase MnmE 297 473 - -
Viun9g02538 545 Pfam GTP-binding protein TrmE N-terminus 81 201 IPR018948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02538 Viun-Chr9 34485346 34489625 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02538 K03650 - gmx:100779193 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02538 9 34485346 34489625 Viun9g02538 9 34485346 34489625 ECH