Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02502 ATGGAACCGGGTCTCTCTCTCGGGTTGAGCGCGTCGTCGACCGCGGCTCCTCTCAGCGACACCTCTGTGCCGTGGCGGTTTCGACACCTCAAAGAAGAAGAAGAAGAGGATGAAAACAACGGTGAGACTATTAACTTCATGGACCAGCGCGTGAAGAGGAAGATAGAAGGACATCAACAACCCTGTTTTCCTTCGAAGCGTGTGGCGATGGATTCCTCGGTGGGATGGTGGAACCAGCCTCTGGAAGTGGCGGACCCCGAGATTTTCGACATCATGGAGAAAGAAAAAGGAAGACAGTTCAAGGGAATAGAGTTGATTGCTTCGGAGAACTTCGTGTGCAGGGCAGTGATGGAAGCTTTAGGAAGCCATTTAAGCAATAAATATTCTGAGGGAATGCCTGGGGCCAAGTACTATACAGGAAATCAGTACATTGATGAGATTGAGCTTCTATGTTGTCAGCGTGCGTTGTCGGCCTTTGACCTTCACCCTAACAATTGGGGTGTTAATGTTCAACCTTATTCTTGTACTTCTGCTAATTTTGCTGTGTACACTGGGATTTTGCATCCCGGGGATAGGATTATGGGTATGGATTCAGCCTCTGGGGGGCATTTGAGTCATGGGTATTATACTCAAGGGGGTAAGAAGGTTTCTGCTGCTTCTATTTTCTTCGAGACTTTGCCTTATAAGGTTAATCCTCAGAGTGGTTACATAGACTACGATAAGCTTGAGGAGAAAGCGATGGATTTTAGGCCTAAGATACTTATCTGCGGTGGGAGTTCGTACCCCAGGGAATGGGATTATGCGAGGTTCAGGCAGGTTGCTGACAAGTGTGGGGCAGTGTTGATGTGTGACATGGCGCATATCAGTGGTCTTGTGGCAGCTAAGGAAGTGGTTAGTCCATTTGATTACTGTGATATTGTTACCTCGACTACTCACAAAAGTCTCCGAGGTCCAAGGGGAGGTATCATCTTTTATAGAAGGGGGCCAAAACAGAGGAGGCAAGGTTTTGTGCTGAATCATGGAGACGATAGTAATTATGATTTTGAGGAGAAAATAAACTTTGCTTTGTACCCATCATTACAAGGAGGCCCTCATAATAATCATATTGCTGCTCTTGCCATAGCTTTAAAACAAGTTGCAACTCCAGAGTACAAAGGGTACATGCAGCAGGTGAAGAGAAATGCGCAGGCATTAGCATCTGCCTTGTTGAGAAGAAATTTCAGATTGGTGACAGGTGGGACCGACAATCATCTTTTGCTATGGGATCTAACAGCACTTGGTTTAATTGACAGAAACTATGAAAAGGTCTGCGAGGCGTGTCACATCACTCTCAATAAATGTGCCATTTATGGTTCCATTTCTCCTGGAGGAGTGAGAATTGGTACTCCTGCAATGACATCAAGAGGCTGTTTTGAGGAAGATTTTGAGACCATAGCTGATTTTCTTCTGAGGGCAGCTCAGATTACCAGCATGGTGCAAAGGGAACATGGGAAATCATGTAAAGATTTTCTGAAGGGTCTTGAGAATAATAAAGATATTTCTGAGCTCAGAAATCGGGTTGAGTCATTCAGTTCTCAGTTTGCAATGCCAGGATTCGATACGTGA 1605 0.4536 MEPGLSLGLSASSTAAPLSDTSVPWRFRHLKEEEEEDENNGETINFMDQRVKRKIEGHQQPCFPSKRVAMDSSVGWWNQPLEVADPEIFDIMEKEKGRQFKGIELIASENFVCRAVMEALGSHLSNKYSEGMPGAKYYTGNQYIDEIELLCCQRALSAFDLHPNNWGVNVQPYSCTSANFAVYTGILHPGDRIMGMDSASGGHLSHGYYTQGGKKVSAASIFFETLPYKVNPQSGYIDYDKLEEKAMDFRPKILICGGSSYPREWDYARFRQVADKCGAVLMCDMAHISGLVAAKEVVSPFDYCDIVTSTTHKSLRGPRGGIIFYRRGPKQRRQGFVLNHGDDSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKGYMQQVKRNAQALASALLRRNFRLVTGGTDNHLLLWDLTALGLIDRNYEKVCEACHITLNKCAIYGSISPGGVRIGTPAMTSRGCFEEDFETIADFLLRAAQITSMVQREHGKSCKDFLKGLENNKDISELRNRVESFSSQFAMPGFDT 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02502 534 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 72 533 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun9g02502 534 Hamap Serine hydroxymethyltransferase [glyA]. 80 531 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun9g02502 534 FunFam Serine hydroxymethyltransferase 110 328 - -
Viun9g02502 534 PIRSF SHMT 62 534 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun9g02502 534 Pfam Serine hydroxymethyltransferase 81 481 IPR039429 -
Viun9g02502 534 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 305 321 IPR019798 GO:0030170
Viun9g02502 534 SUPERFAMILY PLP-dependent transferases 76 531 IPR015424 -
Viun9g02502 534 CDD SHMT 85 523 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun9g02502 534 Gene3D - 110 389 IPR015421 GO:0003824
Viun9g02502 534 Gene3D Aspartate Aminotransferase, domain 1 85 530 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02502 Viun-Chr9 34132455 34137743 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02502 K00600 - gmx:100776419 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02502 9 34132455 34137743 Viun9g02502 9 34132455 34137743 ECH