Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02501 ATGGCTACTTTCCTCTCCAATCAATCTCTGTTGGCTCCTTGTCCTTGTTCTACTCCCTTCTCTTCAAACCCCTTTCAAACCCTAAAACCCAAAATCATATCTTTTTCATCTCGTGGGTTTCCAAGTCCCCTAAATTCCTCTCCCAATCGAAGAAACCCGTTGAAGTATTCTCAAGGTCCCCCTCCAACTGGAAATGATGAGACAGGTGAGACCCGGAAAGATTTCAGAGGGATAGACGGTGATGGAGATAAAAAACCATTACCCAGTTTAATGGTCCTCGTTGAAGCATACAAAGAAGCCTTTTTTAATGGTGATGAAAATGGTGTTGCTCTGATTGAAAAGGGAATATATTCAGCTGTAAATAGAAAAAATAAATTGATTCAGAATGTATCAAGTTTATCAGCAGACAAAGCTACTTCCAAGGATAGATATGTTCGATTACAAGCTGATTTTGACAATTTTAGGAAAAGGTCCGACAAAGAAAGACTTAGCATCCAATCTGATGCCCAACAAGAACTCATTGAACAGCTTTTGTTGATGGTGGACAGTTTTGAAAAAACAAAACAGCAAACTAAAGCAGCAACAGAGAAAGAGAAGAAAATTGATGTTAGCTATCAAGGAATTTACAAACAATTTGTAGAGGTTCTGAGGAGTCATCATGTTTCAGTGATAGCAACAGTGGGCAAGCCGTTTAATCCCTTGCAACATGAAGCCATTGCACGTGAGGAGTCAACAGAGTTCAAGAAAGGGATTATAATTAAAGAAACACGACGTGGTTTCTTGCTCAGAGATCGAGTTCTAAGGCCAGCCCAGGTGAAGGTTTCATTAGGTCCTGGAGCTACGAAATCTCCTGTGTCTCCTGACAACTCCATGGAGCGACCTTCAACAGCTGCTGGAATAGATGAAAGATAG 912 0.4068 MATFLSNQSLLAPCPCSTPFSSNPFQTLKPKIISFSSRGFPSPLNSSPNRRNPLKYSQGPPPTGNDETGETRKDFRGIDGDGDKKPLPSLMVLVEAYKEAFFNGDENGVALIEKGIYSAVNRKNKLIQNVSSLSADKATSKDRYVRLQADFDNFRKRSDKERLSIQSDAQQELIEQLLLMVDSFEKTKQQTKAATEKEKKIDVSYQGIYKQFVEVLRSHHVSVIATVGKPFNPLQHEAIAREESTEFKKGIIIKETRRGFLLRDRVLRPAQVKVSLGPGATKSPVSPDNSMERPSTAAGIDER 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02501 303 PANTHER GRPE PROTEIN 93 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun9g02501 303 CDD GrpE 141 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun9g02501 303 PRINTS GrpE protein signature 173 188 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun9g02501 303 PRINTS GrpE protein signature 255 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun9g02501 303 PRINTS GrpE protein signature 145 161 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun9g02501 303 PRINTS GrpE protein signature 228 243 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun9g02501 303 MobiDBLite consensus disorder prediction 67 82 - -
Viun9g02501 303 ProSitePatterns grpE protein signature. 231 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun9g02501 303 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 126 219 IPR013805 -
Viun9g02501 303 Hamap Protein GrpE [grpE]. 65 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun9g02501 303 Gene3D - 112 217 IPR013805 -
Viun9g02501 303 MobiDBLite consensus disorder prediction 39 65 - -
Viun9g02501 303 FunFam Protein GrpE 220 275 - -
Viun9g02501 303 Gene3D Head domain of nucleotide exchange factor GrpE 221 275 IPR009012 GO:0006457
Viun9g02501 303 MobiDBLite consensus disorder prediction 39 82 - -
Viun9g02501 303 Pfam GrpE 121 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun9g02501 303 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 222 276 IPR009012 GO:0006457
Viun9g02501 303 MobiDBLite consensus disorder prediction 273 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02501 Viun-Chr9 34122895 34127467 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02501 K03687 - gmx:100809893 469.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02501 9 34122895 34127467 Viun9g02501 9 34122895 34127467 ECH