Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02493 ATGGAAAACGCCGATGTATTCTTGGGCTTACAGGACTTCCTCGAGCGCATGCGGCAGCCCTCCGCCGCTGAATTCGTCAAAGCAATCAAAAGTTTTATCGTTTCGTTTTCGAACAATGCTCCTGACCCCGAGAGGGACAGTGCCTTGGTTCAAGCGTTCCTTGCGAAAATGGAAGCGGATTTCAGGGCTCATCCACTTTGGGCTGGTTGCACTGAAGAGGAGCTCGAAAGTGCCGGTGAAGGGCTTGAGAAGTATGTCATGACAAAGTTGTTTGCTCGTGTATTTGCTTCAGTTCCAGATGATGTAAAACTTGATGACCAACTTTCTGAGAAGATGGCTTTGATTCAGCAATTTGTTCGACCTGAAAATTTGGATATCGAGCCACCATTTCAGAATGAATCATCGTGGTTGCTCGCACAGAAAGAATTACAGAAGATCAACATGTACAAAGCACCAAGGGACAAACTTGTGTGTATTCTGAATTGTTGCAGGGTTATTAGCAACTTGCTGCTTAATGCTTCGCTTGCTTCCAAAGAGAATCCTCCGGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTAACCCTAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGGCATCAATCTCGATTGGTTGGAGAAGCAGCATATTATTTTACCAACATGCTCTCTGCTGAGTCCTTCATCTCAAACATTGATGCAAAAGCCATTTCAATGGATGAAGCTGAGTTTGAGAGTAACATGGAATTTGCTCGTGCTATGCTTTCAGGCATTTCAGTTGATACACAAGATCCTGGTTCACCTTATCCAAATAATGGGCAGCATCCAGTAGCAGAACCCACTAGGCACAAAAATAAAGCTTTGAATGATAATAAGGACCCTGCAGTACGAACTCCGTCATCTGTTACAAAATCAGAAGGCAAGAAAGTTGCTTTTGCAGATGAATTACTGATCACAAAAGTTCCATCCCTCTCGGATTTGGAGAATAAAGGGGCAAATATGATTCTAAAGGAGGACAAGTTGAATGAAGTTTTCGGGGAGTTTCCATATTTGTTTGCTAGTGTAGGGGATCTAACAGTAAGTGATGTTGAAGACCTGCTAAATAATTACAAACAACTTGTTTTCAAGTATGTCTCTCTTTCTAAAGGGTTAGGCGTATCTCCTACACCTCAGCCGCCAGCCGCCCAAAATAATTCTGAAGACCGTGCTGAAACAACAATAGATTCTTCAGACGGTGGACCTCTAGATGAGAATAATAAATCAGAAGAATCTATTGATAAAACAGAGGAAACTTTGGATAAAGTTTCACCTATCGAGGAGCAAAAAGTTGAGTCTGATTTGCCACAGGATGAGCCAGCTGCTCCTGATGGTGATGCCCCGCTAAGTAATCAGAAATAG 1422 0.4262 MENADVFLGLQDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPERDSALVQAFLAKMEADFRAHPLWAGCTEEELESAGEGLEKYVMTKLFARVFASVPDDVKLDDQLSEKMALIQQFVRPENLDIEPPFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCRVISNLLLNASLASKENPPGADEFLPVLIYVTLKANPPQLHSNLLYIQRFRHQSRLVGEAAYYFTNMLSAESFISNIDAKAISMDEAEFESNMEFARAMLSGISVDTQDPGSPYPNNGQHPVAEPTRHKNKALNDNKDPAVRTPSSVTKSEGKKVAFADELLITKVPSLSDLENKGANMILKEDKLNEVFGEFPYLFASVGDLTVSDVEDLLNNYKQLVFKYVSLSKGLGVSPTPQPPAAQNNSEDRAETTIDSSDGGPLDENNKSEESIDKTEETLDKVSPIEEQKVESDLPQDEPAAPDGDAPLSNQK 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02493 473 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Viun9g02493 473 MobiDBLite consensus disorder prediction 392 473 - -
Viun9g02493 473 MobiDBLite consensus disorder prediction 269 312 - -
Viun9g02493 473 Gene3D VPS9 domain 99 265 IPR037191 -
Viun9g02493 473 MobiDBLite consensus disorder prediction 392 411 - -
Viun9g02493 473 Gene3D - 17 97 - -
Viun9g02493 473 SMART vps9_2 135 254 IPR003123 -
Viun9g02493 473 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Viun9g02493 473 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Viun9g02493 473 MobiDBLite consensus disorder prediction 423 457 - -
Viun9g02493 473 FunFam Vacuolar protein sorting-associated protein 9A 99 265 - -
Viun9g02493 473 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Viun9g02493 473 PANTHER RAB GDP/GTP EXCHANGE FACTOR 7 387 IPR045046 GO:0005085|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02493 Viun-Chr9 34077523 34083658 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02493 K20131 - gmx:100810958 799.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02493 9 34077523 34083658 Viun9g02493 9 34077523 34083658 ECH