Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02343 ATGATTAAGCCTTGTTCTTATAGAAAAAGTATATTATCCAAATGGGGGTTGTTTACGAAAATGCACAGCACAAGTGAGGCGATTCTGGACATTGGAGAAGCGAGCGAGAAAGTGAGCAAGGTTATGATGACGTGTCCCACACTGGCACTTGACACTGCTCTTAATCAAACTGGAGTTAGAGTTTCCCCTGATTTAGTTGAAAATGTTCTCAAACGATTTGAGAATGCGGGCATGTCAGCATTTCGGTTCTTTGAGTGGGCAGAGAAGCAGAGAGGGTACTCACACAGCGTAAGGGCATATCACTTGATGATTGAATCTTTGGCTAGGATCAGACAGTACCAGATTGTGTGGGACCTTGTTAATGCAATGAGGAAAAAGGGCATGCTAAATGTGGAGACTTTTTGCATCATGATGAGAAAGTATGCTAGAGCTAACAAGGTCGACGAGGCTGTTTACACCTTTAATGTTATGGATAAGTTCGATGTGGTTCCAAATCTTGCTGCATTTAATGGTTTGTTAAGTGCTTTGTGCAAGTCCAACAATGTGAGGAAGGCTCAGGAGATTTTTGATGCTATGAAGGGTCGATTCGAGCCAGACGCGAAAACTTATAGCATTTTGCTGGCGGGGTGGGGAAAAGCTCCTAATCTTCCCCGGGCAAGGGAGGTTTTTGGAGAAATGGTTCGTGCTGGGTGTGATCCTGACGTTGTTACTTATGGTATAATGGTTGATGTTCTTTGCAAAGCAGGGAGGGTTGATGAAGCTGTTGAGGTTGTGAAGGAAATGGATGAGAGCAATTGCAGGCCTACATCTTTCATTTATAGTGTCCTTGTTCATACTTATGGAGTGGAGCACCGAATTGAAGATGCTATTGATACATTCCTGGAGATGGAGAGGAAGGGAATCAAGGCTGATGTTGCGGTTTATAATGCCTTGATTGGTGCCTTTTGTAAAGTAAATAAGTTTAAAAACGTGCACAGGGTCTTGCAGGAGATGAAGATCAATGGTGTTGCTCCGAATTCAAGGACCTGTAATGTTATCATAAGCAGTATGATTGGTCAGGGACAGACTGACAGAGCTTTTAGAGTTTTCCGCCGGATGATCAAGTTATGTGAACCAGATGCTGACACTTACACAATGATGATAAAAATGTTTTGTGAGAAAAATGATCTGGAGATGGCTCTGAGAATATGGAAGTTTATGAAATCAAAGCAATTTGTTCCAAGCATGCACACCTTTTCTGCCCTTGTCAATGGGCTGTGTGAAAAAGGTGATGCCGCAAAAGCTTGTGTTGTGCTTGAAGAGATGATAGAGAAGGGAATTCGACCATCACGTATTACGTTTGGGAGGTTAAGACAGTTGCTTGTAAAGGAAGGGAGAGAAGATGTGCTCAAATTTCTTCATGAGAAAATGAATCTTCTTGTCAAGGAGCCTTTATATGGTTGA 1443 0.4234 MIKPCSYRKSILSKWGLFTKMHSTSEAILDIGEASEKVSKVMMTCPTLALDTALNQTGVRVSPDLVENVLKRFENAGMSAFRFFEWAEKQRGYSHSVRAYHLMIESLARIRQYQIVWDLVNAMRKKGMLNVETFCIMMRKYARANKVDEAVYTFNVMDKFDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGRFEPDAKTYSILLAGWGKAPNLPRAREVFGEMVRAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDESNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMERKGIKADVAVYNALIGAFCKVNKFKNVHRVLQEMKINGVAPNSRTCNVIISSMIGQGQTDRAFRVFRRMIKLCEPDADTYTMMIKMFCEKNDLEMALRIWKFMKSKQFVPSMHTFSALVNGLCEKGDAAKACVVLEEMIEKGIRPSRITFGRLRQLLVKEGREDVLKFLHEKMNLLVKEPLYG 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02343 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Viun9g02343 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Viun9g02343 480 Gene3D Tetratricopeptide repeat domain 194 263 IPR011990 GO:0005515
Viun9g02343 480 Gene3D Tetratricopeptide repeat domain 34 193 IPR011990 GO:0005515
Viun9g02343 480 NCBIfam pentatricopeptide repeat 342 368 IPR002885 -
Viun9g02343 480 NCBIfam pentatricopeptide repeat 376 408 IPR002885 -
Viun9g02343 480 NCBIfam pentatricopeptide repeat 307 339 IPR002885 -
Viun9g02343 480 NCBIfam pentatricopeptide repeat 202 235 IPR002885 -
Viun9g02343 480 NCBIfam pentatricopeptide repeat 410 443 IPR002885 -
Viun9g02343 480 NCBIfam pentatricopeptide repeat 272 305 IPR002885 -
Viun9g02343 480 NCBIfam pentatricopeptide repeat 133 165 IPR002885 -
Viun9g02343 480 NCBIfam pentatricopeptide repeat 236 269 IPR002885 -
Viun9g02343 480 NCBIfam pentatricopeptide repeat 168 194 IPR002885 -
Viun9g02343 480 Gene3D Tetratricopeptide repeat domain 353 478 IPR011990 GO:0005515
Viun9g02343 480 Pfam Pentatricopeptide repeat domain 295 349 IPR002885 -
Viun9g02343 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 130 164 IPR002885 -
Viun9g02343 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Viun9g02343 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Viun9g02343 480 Pfam PPR repeat family 164 209 IPR002885 -
Viun9g02343 480 Pfam PPR repeat family 372 420 IPR002885 -
Viun9g02343 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 369 IPR002885 -
Viun9g02343 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 165 195 IPR002885 -
Viun9g02343 480 Gene3D Tetratricopeptide repeat domain 264 352 IPR011990 GO:0005515
Viun9g02343 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Viun9g02343 480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Viun9g02343 480 Pfam PPR repeat 230 261 IPR002885 -
Viun9g02343 480 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN PET309, MITOCHONDRIAL 66 367 - -
Viun9g02343 480 Pfam PPR repeat 133 160 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02343 Viun-Chr9 32973737 32977237 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02343 91 468 Glycosyltransferase AT1G05670 23.918 1.43e-31 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02343 - - gmx:100790096 877.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02343 9 32973737 32977237 Viun9g02343 9 32973737 32977237 ECH