Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02338 ATGGAGCTGCCGGAGTGCCCAGTGTGCCTTCAATCCTTCGACGACCGCGACGCAATTCCTCGGGTCTTATCATGTGGACACTCGGTTTGCGAAGTTTGTCTCGTGGAGCTTCCGCAGCGGTACCCGGATACTATTCGGTGCCCCGCTTGCACCCAACTCGTGAAGTATCCTTCTCAACAAGGCCCTTCTTCTCTTCCCAAAAACATCGACCTCCTCAGACTCTCGCTCCAACACTTCCCTTCTTCTTCTAATCGTTCCCACAACAAACGGTCCACGGTCAATTCTGGTTACGATCACTCTTCGTTCTGGTCCCCTGAGTTCTATGATGCATGGAAGAATTGGATTCTTCCGCGCGACGCTGTTTTAACTGACGATCATTGTCATGGCCGGTTCAGTTCGTCCAAGGGTAGGGTTTGTTTCGGAGTTAACCGCTGCGTGAGTCTCGCTCCGATTGTTTGTTTCTCTCCTGGGAATGACTCTAAGTTTAGGTTTAGTTATGTTGCATGGGTGATTAAGTGTTTGGAGGGGATGAGCGAGGCTGCGAGAGAGGAGTTAGCATGGATTCTTGAAGCTTCCGTGAGGCAGAGTAGGGTGTGTAGGGTTTTTGGGTTGTGGAGTGAAGGGGTGGAGGGACCTCTGTATATGGTGTTTGAGAGGCAAAGTGGTAATCTTTTAGACAAGTTTGGTGAATTGAGAAATGGATTTGTTGGTGGGAATGAGGGTGGTTTGGAGTTGGACACTGGTGGGATTTTTAGTTTTTTAACGATTGGGAGGGGTATATGTGAAGCTGTGCTTTCTTTGCATTTGGAAGGTTTGGTTGCTGGTTGTTTAGGGCTTTCTTGTTTCTCTTTTGATGAGCTCGGTGGGATTTGTGTTGATTTGAATGAGGTATTGGGAATGGGAAGGCGGTTGCACGCTGTTTTCAGTAAACATGAGAAAGAAGCAATGTCTAAAGATTGCTTGGAAAATGAGATTTTTGTAAGTCCTGAGGTTTTGTATGAGTTGTTGCACAAGAGGAGATCTGGTCCTGATGGTGGGCGTTTCAGATATCCAATAGGGTATGGCTCAGATGTATGGTCATTGGCCCGTGTACTGTTGTGGCTTCTTATTGGAAATGTGCTGCCTCGGAATACCTTGGAAATGAATGAAGAGAGTGATGGTGATAGCACAGCTAGTTATGTGTGTTGGGTGGAGAAAGTTAGTTCTGTTTTGGAAGACAAACTAGGCTCTGAGTATCTGTCACTGGGGAAGACTCTTTGCAAATGTTTGGACGTCAATCCAGGAAACCGTCCAGATGTGGTAGATGTAAGGAAGTGCATTCAGGATATGTTAGTCAAACCTCAATTTGAAATTCTGGGCAACTTAGAGGTCACCATAAGTAAGGACAGTACAGGTCGCTGTTTGGTTCTAGGGGAGCTGTCTCTGTTGCCTAAGGAATGGTCTGACGAACCAAGAGAGTTTGAGTTGCGGGAGAAACAAATTGGTGGTCAACCAAATTTTGCTCAAGATGGCCAAGACAAGTCTGATGAGGACTCTGCTGCTGGTTTATCTGGGGGATTGACTGAACTCAAACATCTGCGAGGCCATCTTGATTTTGTCAGTGGATTGGCTGTTGGAGGTGGGTATTTGTTCAGCTCCTCATTTGACAAAACTGTTTGCGTATGGTCCTTGAAGGACCTTTCTCCTTTACACAGATTTAGTGGTCATGAGAATAAAATCATGGCCCTAGTTTGTGTAGATGGAAAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTATTTGGGGAACTGCCCCTTTTAGGCGAGATCCCTTAAGGAAATGGTATGAGAAGCAGGATTGGCGTTTTAGTGGTATCCACTCCTTGGCTGTTTCCAAAAATTATTCTCTTTACACCGGAAGCGGAGATAGAACAATAAAAGCTTGGTCATTAGAGGATGAAACTTTGATATGCACAATGACTGGTCATAAATCTGTAGTTTCCACACTTGCTATTTGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGTACAGTTCGGTTGTGGAGTCTAAATGACCACTGTCCATTGACAGTTCTGGGGGAAGATAGGATTGCAGATATGCACTCTATCCTGGCTATTACTGTAGATAGGCATTTGCTTGTTGCAGCACATGAGAATGGATGCATAAAGGTCTGGAGGAATGATGTGTTCATGAAGTCCAAAACATTGCATAACGGAGCCATTTTTGCAATGAGTATGCAGGGAAAATGTCTTTACACAGGAGGTTCGGACACAAATGTTAATATACAGGAATTATCTGGAGACGAATTTGAACTGGATGTCAAACCATATGGATCCATTCCATACCGTTCTACTGTTACAACTATATTATACAGCCAAGGAAAACTGTACGTCGGATATACTGACAAGTCTATTAAGGAAAATCTCGGTCGTGTTCAAAAGCGTTTCACCGACTTAACGAGCTTGAACTATTGGGTTGTTCGCGACTACTACCGTCTCGTGAACTCCGTCAACGCCTTCGAGCCTCAGATTCAGGTGCTCTCCGATGAACAGCTGGCCGGGAAGACCTCCGAGTTTCGCCGCCGGCTCGCGCGAGGGGCTACGCTTGCTGACATTCAAGCTGAGGCGTTCGCTGTTGTTCGTGAAGCTGCATGGAGAAAACTTAGAATGCGCCATTTCGATGTTCAGATTATTGGTGGGGCAGTGCTGCATGATGGGTCCATTGCTGAGATGAAAACCGGGGAGGGTAAAACCTTGGTTTCCACACTAGCTGCTTATCTAAATGCCCTGACCTCTGAGGGTGTTCATGTGGTAACTGTTAACGATTATTTAGCTCAGCGTGACGCCGAATGGATGGGACGCGTTCATCGTTTCTTAGGTCTATCTGTTGGTCTTATTCAGAGAGGAATGAATGCTGAAGAACGAAGAATCAACTACAGATGTGATATAACATATACCAATAATTCGGAGCTTGGATTTGATTACCTGCGAGATAATCTGGCTGGAAATCGTGACCAGCTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGGAATCGTTGATGAAGTGGATTCTGTCTTGATAGACGAGGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCACGATTCCCTGTTGCTGCAAAAGTAGCTGAACTTCTTAAACAGGGCATTCATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCGGAAATGGCTTTAGAAACTAATGACCTTTGGGATGAAAATGATCCGTGGGCAAGATTTGTGATTAATGCTATAAAAGCTAAAGAATTCTATCGTCGAGATGTGCAATACATTGTCAGAGATGGAAAGGCTTTGATTATCAATGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTATTGTTGTGGCACAGATCACATATCAGTCATTATTCAAGCTCTATCCGAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTTTTAAAAATGTTTAGGATGCCAGTCATTGAAGTGCCCACAAATCTTCCTAATATTCGAAAAGATTTACCAATTCAAGCTTTTGCTACTGCTCGTGGGAAATGGGAGCAAGTTCGCCGAGAAGTTGAATATATGTTTAGACAAGGTCGGCCTGTCTTAGTTGGAACAACTAGTGTAGAAAATTCGGAACTTTTGTCTGGTATGCTATGGGAATGGAATATTCCTCACAATGTTCTGAATGCTAGGCCCAAGTATGCTGCAAAAGAAGCAGAAGTTGTTGCACAGGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCCGGCAGGGGCACAGACATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGAGAAATTATAGAGGATAGCTTACTTTCATTTTTGACACGGGAGGATCCAAACGTCGAACTTGCAGGGGAAGCTATTTCACAAATGGTGCTTCCAAAGATAACAGTTGGATCATCATCAATGGCCTTACTGGCTAGAACAACCTTAATGGCCAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCTAAATCTTTTATCTTGGAGGCTATTGAAATGAATCTTTCATATAGTTTGGAAGAGCTAGAGAAGCTTGCAAATGAAGAATCTGAGACCTACCCTCTTGGTCCAACTGTAGCGCTTACCTATCTGTCAGTTTTGAAGGATTGTGAAGAACATTGTTTGAATGAAGGTTCTGAGGTAAAAAGGCTTGGGGGACTTCACGTGATTGGTACATCTTTACACGAGTCCCGGAGAATAGATAACCAGCTGCGTGGCAGAGCAGGGAGACAAGGGGATCCAGGATCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGATACTGAATGGGCAGTGAGACTTATCTCAAGGATTACAAATGATGAGGATCTGCCAATTGAGGGTGATGCCATTGTAAAGCAGCTTTTGGCGCTGCAAATCAATGCAGAAAAATTCTTCTTTGGCATAAGGAAGAACCTCGTTGAGTTTGATGAAGTGTTGGAGGTGCAACGAAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGATGATGAAAGTTGTTCCCAACACATACTCCAGTACATGCAAGCAGTGGTTGATGAGATCGTCTTCAATAATATTGATCCAGTGAAGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTAAAAGAATTCGTGACTGTCGGTGGAAAGCTGTTGCATGAATCTTTTGAAGGAATTAGTGATCACACTTTGCTAAATTCACTTGGGCTACTAAATGATGTGAGCTCAGTTGATATTGTAAACTTTTCCCTTCCAAATTTGCCAGCGCCTCCAAATGCCTTCAGGGGAATACGCAGGAAGAGCTCGTCATTAAGACGATGGCTTGCTATCTGCACAGATGATTTAATTGGGAATGGGAAGTATCAAACCACTTCTAATCTTCTTCGCAAGTATCTTGGAGATTTTTTAATTGCTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGCAAAGGAAATTGAGAGAGCTGTTCTTTTGCAAACTCTTGATTGTTTCTGGAGAGATCATCTAGTAAACATGAATAGACTCAGCTCTGCGGTGAACATTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTACAAAATTGATGGTTGTCGGTTTTTTATCTCAATGCTAAGTGCCACTCGGAGGTTAACTGTAGAAGCACTGCTGCGGTATTGGACATCTCCAATGGAATCTGATGAACTATTTTTATCATGA 5421 0.4363 MELPECPVCLQSFDDRDAIPRVLSCGHSVCEVCLVELPQRYPDTIRCPACTQLVKYPSQQGPSSLPKNIDLLRLSLQHFPSSSNRSHNKRSTVNSGYDHSSFWSPEFYDAWKNWILPRDAVLTDDHCHGRFSSSKGRVCFGVNRCVSLAPIVCFSPGNDSKFRFSYVAWVIKCLEGMSEAAREELAWILEASVRQSRVCRVFGLWSEGVEGPLYMVFERQSGNLLDKFGELRNGFVGGNEGGLELDTGGIFSFLTIGRGICEAVLSLHLEGLVAGCLGLSCFSFDELGGICVDLNEVLGMGRRLHAVFSKHEKEAMSKDCLENEIFVSPEVLYELLHKRRSGPDGGRFRYPIGYGSDVWSLARVLLWLLIGNVLPRNTLEMNEESDGDSTASYVCWVEKVSSVLEDKLGSEYLSLGKTLCKCLDVNPGNRPDVVDVRKCIQDMLVKPQFEILGNLEVTISKDSTGRCLVLGELSLLPKEWSDEPREFELREKQIGGQPNFAQDGQDKSDEDSAAGLSGGLTELKHLRGHLDFVSGLAVGGGYLFSSSFDKTVCVWSLKDLSPLHRFSGHENKIMALVCVDGKEPLCISGDSGGGIFIWGTAPFRRDPLRKWYEKQDWRFSGIHSLAVSKNYSLYTGSGDRTIKAWSLEDETLICTMTGHKSVVSTLAICDEVLYSGSWDGTVRLWSLNDHCPLTVLGEDRIADMHSILAITVDRHLLVAAHENGCIKVWRNDVFMKSKTLHNGAIFAMSMQGKCLYTGGSDTNVNIQELSGDEFELDVKPYGSIPYRSTVTTILYSQGKLYVGYTDKSIKENLGRVQKRFTDLTSLNYWVVRDYYRLVNSVNAFEPQIQVLSDEQLAGKTSEFRRRLARGATLADIQAEAFAVVREAAWRKLRMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNAEERRINYRCDITYTNNSELGFDYLRDNLAGNRDQLVMRWPKPFHFGIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLKQGIHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVINAIKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSIVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFRMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFRQGRPVLVGTTSVENSELLSGMLWEWNIPHNVLNARPKYAAKEAEVVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTREDPNVELAGEAISQMVLPKITVGSSSMALLARTTLMAKYVSKSEGKSWTYQKAKSFILEAIEMNLSYSLEELEKLANEESETYPLGPTVALTYLSVLKDCEEHCLNEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISRITNDEDLPIEGDAIVKQLLALQINAEKFFFGIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDESCSQHILQYMQAVVDEIVFNNIDPVKHPRSWGLSKLLKEFVTVGGKLLHESFEGISDHTLLNSLGLLNDVSSVDIVNFSLPNLPAPPNAFRGIRRKSSSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLNVVEESGYDERHAKEIERAVLLQTLDCFWRDHLVNMNRLSSAVNIRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALLRYWTSPMESDELFLS 1806
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02338 1806 PRINTS G protein beta WD-40 repeat signature 633 647 IPR020472 -
Viun9g02338 1806 PRINTS G protein beta WD-40 repeat signature 673 687 IPR020472 -
Viun9g02338 1806 PRINTS G protein beta WD-40 repeat signature 543 557 IPR020472 -
Viun9g02338 1806 ProSiteProfiles Trp-Asp (WD) repeats profile. 526 565 IPR001680 GO:0005515
Viun9g02338 1806 ProSiteProfiles SecA family profile. 816 1520 IPR014018 -
Viun9g02338 1806 ProSiteProfiles Zinc finger RING-type profile. 6 51 IPR001841 -
Viun9g02338 1806 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 902 1065 IPR014001 -
Viun9g02338 1806 Gene3D Helical scaffold and wing domains of SecA 1662 1793 - -
Viun9g02338 1806 Hamap Protein translocase subunit SecA [secA]. 808 1796 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 FunFam Protein translocase subunit SecA 1523 1642 - -
Viun9g02338 1806 MobiDBLite consensus disorder prediction 492 514 - -
Viun9g02338 1806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1214 1501 IPR027417 -
Viun9g02338 1806 CDD SF2_C_secA 1217 1488 IPR044722 -
Viun9g02338 1806 Gene3D Helical scaffold and wing domains of SecA 1523 1632 - -
Viun9g02338 1806 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 656 688 - -
Viun9g02338 1806 ProSiteProfiles Protein kinase domain profile. 129 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Viun9g02338 1806 ProSiteProfiles Trp-Asp (WD) repeats profile. 656 688 IPR001680 GO:0005515
Viun9g02338 1806 Pfam RING-type zinc-finger 6 48 IPR027370 -
Viun9g02338 1806 NCBIfam preprotein translocase subunit SecA 841 1612 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 Coils Coil 1394 1414 - -
Viun9g02338 1806 Pfam SecA DEAD-like domain 831 1198 IPR011115 GO:0005524|GO:0016020|GO:0017038
Viun9g02338 1806 FunFam Protein translocase subunit SecA 1664 1793 - -
Viun9g02338 1806 SMART SecA_DEAD_2 820 1199 IPR011115 GO:0005524|GO:0016020|GO:0017038
Viun9g02338 1806 Gene3D - 499 603 IPR015943 GO:0005515
Viun9g02338 1806 Gene3D - 605 827 IPR015943 GO:0005515
Viun9g02338 1806 SUPERFAMILY Pre-protein crosslinking domain of SecA 1043 1164 IPR036670 GO:0016020|GO:0017038
Viun9g02338 1806 PRINTS SecA protein signature 876 900 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 PRINTS SecA protein signature 930 940 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 PRINTS SecA protein signature 914 928 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 PRINTS SecA protein signature 1173 1190 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 PRINTS SecA protein signature 1136 1158 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 PRINTS SecA protein signature 1210 1223 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 PRINTS SecA protein signature 983 1003 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 SUPERFAMILY RING/U-box 5 59 - -
Viun9g02338 1806 SMART ring_2 6 50 IPR001841 -
Viun9g02338 1806 SMART WD40_4 689 730 IPR001680 GO:0005515
Viun9g02338 1806 SMART WD40_4 731 768 IPR001680 GO:0005515
Viun9g02338 1806 SMART WD40_4 559 599 IPR001680 GO:0005515
Viun9g02338 1806 SMART WD40_4 519 556 IPR001680 GO:0005515
Viun9g02338 1806 SMART WD40_4 649 686 IPR001680 GO:0005515
Viun9g02338 1806 SMART WD40_4 604 646 IPR001680 GO:0005515
Viun9g02338 1806 Pfam SecA Wing and Scaffold domain 1518 1793 IPR011116 GO:0016020|GO:0017038
Viun9g02338 1806 CDD DEXDc_SecA 855 1211 - -
Viun9g02338 1806 SUPERFAMILY Helical scaffold and wing domains of SecA 1524 1802 IPR036266 -
Viun9g02338 1806 SMART SecA_PP_bind_2 1044 1155 IPR011130 GO:0016020|GO:0017038
Viun9g02338 1806 Gene3D - 1214 1520 IPR027417 -
Viun9g02338 1806 CDD RING-HC_TRIM32_C-VII 4 53 - -
Viun9g02338 1806 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Viun9g02338 1806 Gene3D Transferase(Phosphotransferase) domain 1 181 445 - -
Viun9g02338 1806 SUPERFAMILY WD40 repeat-like 521 810 IPR036322 GO:0005515
Viun9g02338 1806 Gene3D - 1045 1165 - -
Viun9g02338 1806 Pfam WD domain, G-beta repeat 522 556 IPR001680 GO:0005515
Viun9g02338 1806 Pfam WD domain, G-beta repeat 653 686 IPR001680 GO:0005515
Viun9g02338 1806 FunFam Protein translocase subunit SecA 834 1054 - -
Viun9g02338 1806 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 824 1212 IPR027417 -
Viun9g02338 1806 FunFam Preprotein translocase SecA subunit 1045 1165 - -
Viun9g02338 1806 Gene3D - 835 1212 IPR027417 -
Viun9g02338 1806 SUPERFAMILY Protein kinase-like (PK-like) 194 448 IPR011009 -
Viun9g02338 1806 Pfam SecA preprotein cross-linking domain 1055 1155 IPR011130 GO:0016020|GO:0017038
Viun9g02338 1806 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 9 1803 IPR000185 GO:0005524|GO:0006605|GO:0006886
Viun9g02338 1806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 87 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02338 Viun-Chr9 32920949 32960407 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02338 521 777 Acyl Lipid Metabolism Gene Families AT3G18860 27.698 2.36e-14 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02338 K03070 - gmx:100793437 3188.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02338 9 32920949 32960407 Viun9g02338 9 32920949 32960407 ECH