Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02172 ATGCTCGCGTTTCGATCCAAGCCTTGCAGGGAAACAGCGACCCTCGCACTCGTCCACTTCAACCACTTGCTCTTCAACTTCACACGCGCCGGGAGCTCTCGCTGCCCTCCACGCGCCACCTTCGGGGTTTCCAGAGGCTACAACGTGGTTGCCTCGTTGGGGGACCCGCCTGAGGTGTGGTCCGGCGGCGGGATCGTCGTTCGTCCCGGGAATTCTAACTTTGAAGTTGCTAGCGGCGCCCCCAACTCCAGCGATTCGAAAGAGGGGTGTTGGGGGGGCTCCAATTTAGGGAACAATTTCCCAACGCCCAAGGAGATTTGCAAGGGGCTCGACAAGTTCGTTATTGGACAAGAGAGGGCCAAAAAGGTGCTTTCCGTGGCGGTTTATAATCACTATAAGAGGATATTTAACGAGTCTTCTTTACCCAAGTGGCCTGCAGGAGATTCGGATGATAATGTGAAGGCTGATGCTGTTGAAGATGATAGAGTCGAGCTTGAGAAAAGCAATATCCTTCTAATGGGGCCAACAGGATCTGGGAAAACATTACTTGCCAAAACTTTGGCTCGGTTTGTAAATGTTCCCTTTGTTATTGCAGATGCAACTTCACTCACTCAGGCTGGTTATGTTGGAGAGGATGTGGAGTCCATTTTATACAAGCTCCTCATGGTTGCAGATTATAATGTTGCAGCTGCACAACAAGGCATTATTTACATCGATGAAGTTGATAAGATTACCAAAAAGGCGGAGAGCCTTAATATCAGTAGAGATGTTTCTGGTGAAGGTGTTCAGCAGGCATTACTAAAGATGCTTGAGGGAACGATTGTCAATGTTCCTGAGAAGGGAGCCCGAAAGCATCCCAGAGGTGACAATATTCAGATTGATACAAAGAATATACTTTTCATTTGTGGAGGAGCCTTCGTCGACTTAGAGAAAACAATCTCAGAAAGGCGACATGATTCTTCTATTGGATTTGGGGCGCCTATACGTGCAAACATGAGGACTGGTAAAGTCACAGAAGCTGCCGTTGCATCATCCTTATTAGAAACTGTTGAAAGTAGTGATCTTATTGCTTATGGTTTAATACCTGAATTTGTTGGGCGGTTTCCTATCCTTGTCAGTTTGTCAGCTTTAACTGAAAATCAACTCATTCAGGTTCTCACAGAACCAAAGAATGCTCTAGGTAAGCAATACAAGAAGATGTTCCAAATGAATGGGGTAAAGCTACATTATACAGAAAGCGCTCTGAGATCAATTGCCAAAAAAGCAATATCTAAAAATACTGGTGCTCGGGGATTACGATCAATCTTAGAGAATGTGTTGGTAGATGCTATGTATGAGATTCCTGATGTTAGAACAGGCGACGATGTTATTGATGCTGCTGTCGTCGATGAAGAGGCTGTTGGAAATGTGGGGTGTGGTGGGAGAGGGGCTAAAATTCTTTATGGTAAGGGTGCATTGGATCGTTATCTCACGGAGCAGAAAAAGGATTCAGAGACCCTGGAAACATCAGCCACAGATCATGAAGCAGACGCAGAACTTCCTTCCATTGTTGCCAGCATGTAA 1563 0.4594 MLAFRSKPCRETATLALVHFNHLLFNFTRAGSSRCPPRATFGVSRGYNVVASLGDPPEVWSGGGIVVRPGNSNFEVASGAPNSSDSKEGCWGGSNLGNNFPTPKEICKGLDKFVIGQERAKKVLSVAVYNHYKRIFNESSLPKWPAGDSDDNVKADAVEDDRVELEKSNILLMGPTGSGKTLLAKTLARFVNVPFVIADATSLTQAGYVGEDVESILYKLLMVADYNVAAAQQGIIYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRHDSSIGFGAPIRANMRTGKVTEAAVASSLLETVESSDLIAYGLIPEFVGRFPILVSLSALTENQLIQVLTEPKNALGKQYKKMFQMNGVKLHYTESALRSIAKKAISKNTGARGLRSILENVLVDAMYEIPDVRTGDDVIDAAVVDEEAVGNVGCGGRGAKILYGKGALDRYLTEQKKDSETLETSATDHEADAELPSIVASM 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02172 520 Gene3D - 376 472 - -
Viun9g02172 520 FunFam CLP protease regulatory subunit CLPX3 mitochondrial 94 375 - -
Viun9g02172 520 Pfam C-terminal, D2-small domain, of ClpB protein 377 447 IPR019489 -
Viun9g02172 520 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 82 495 - -
Viun9g02172 520 SMART AAA_5 166 329 IPR003593 GO:0016887
Viun9g02172 520 Pfam AAA domain (Cdc48 subfamily) 166 370 IPR003959 GO:0005524|GO:0016887
Viun9g02172 520 SMART ClpB_D2_small_2 377 467 IPR019489 -
Viun9g02172 520 MobiDBLite consensus disorder prediction 497 520 - -
Viun9g02172 520 FunFam ATP-dependent Clp protease ATP-binding subunit ClpX 376 472 - -
Viun9g02172 520 Gene3D - 94 375 IPR027417 -
Viun9g02172 520 CDD RecA-like_ClpX 101 374 - -
Viun9g02172 520 NCBIfam ATP-dependent protease ATP-binding subunit ClpX 97 466 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Viun9g02172 520 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 464 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g02172 Viun-Chr9 31247235 31253793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g02172 170 269 Miscellaneous Gene Families AT3G02450 35.644 5.24e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02172 K03544 - gmx:100779768 924.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02172 9 31247235 31253793 Viun9g02172 9 31247235 31253793 ECH