Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g02142 ATGAAAGGTTCATGCCTTCTTCCTTCGAACTCTCTCACCGGAATCAGGACAAGCAAAAAGCTTCCGCATGTGCTATCATTGTGTGAGTTGAAAAGCATATCATGCTTCTCAGTTTGTAATCAAAAGCAAATTTACAGTCAAAAGCTTTACTTTATTCCCATTAAGACTGCTTCTGTTCGGGTCTGCATCTCAAGATCTTCAGTTGGGTCATTGGAATGTGGTGGGACAGGCCCACATAGTGATGCTTATTCTGGATTTTCAGCTCCAGATGACCAGCAGAGAATTGGCAGTTTAGAAAGAGAATTGGAAGAATTATTTGATGAAGTTAAAAGAATGATTAGGATGGGAAATAAAAGTGATGCTATTGACCTGCTAACTGCGAATTACGAAGCAGTCAAAGAGAGCCTGAATGCAGGTACTAAAGGCATAGAAGAAGCTGCAATTTTGGATGTCATAGCACTAGGTTACATGGCTGTTGGAGACTTAAAATTTGTTGGATCTTTGTTGGATATGATGAAAGAAATTGTTGACAATTTGAAGGATGATGCACCTCGTCTGGATTCAATACTTATGCATATGGGAAGTATGTATGCAACGTTGAACATGTTTGAAAAATCATTGGACACATATCAGAGGGCTGTATACATTATGGAGGGGACCTACGGTAGGGATAGTACTTTACTTATCACACCTTATTTGGGTATGGCAAAAGTTCTTGGCTCTTTCGGAAAAGCAACAAAAGCAATAGAGATTTACCAGAGTGTGATCACTCTTTTGGGATCAAGTAGAGGTGCCGAAAGTAAGGATTTGGTCGTACCTTTACTCAGCCTTGGCAATCTTTTACTCAAAGAAGGGAGAGCCAATGATGCTGAAACTCATTTTACTAGAGTTCTCGACATATACACCAAATTATATGGACAAAATGATGGAAGAATTGGAATTGCTATGAGTTCCCTAGCCCGTGTTAAGAGTGCCCAAGGGAAATCAGATGAAGCAATACAATTGTTTAAACGTGCTATTCAGGTCATGAAGGATTCAAATTACTTGTCACCAGATGACAGTATATTGGAAAAGATGAGGGTGGATCTAGCTGAATTACTTCATGCCGCTGGGAGAGGACAAGAAGGCAGAGAAGTATTAGAGGAGTGTTTGTGGATCACTGAGAGGTACAAAGGAAAGGAGCACCCCATCCTGGTGACACACATGATAAATCTTGCAACTTCGTATTCACGGTCAAAGAATTATGCAGATGCCGAGCACCTGTTGAGAAGAAGTTTGCAAATCATGATAAAGCAAAAGGGAACTGATGACCAGTCCATCAGCTTTCCTATGTTACATCTTGCAGTTACACTCTACCATTTGAAAAATGATGAAGAAGCAGAGAAACTTGCTCTGGAGGTTTTGCGCATCCGTGAGAAGGCCTTTGGAAAAAATTCCCTCCCTGTTGGGGAGGCTTTGGATTGTTTGGTGTCTATTCAAACCAGACTTGGTAAGGATGACAGTGAGTTACTCGAGCTGCTTAGAAGGATCCTGAATATCCAAGAAAGAGAATTTGGATATGAAAGTGAGGAGGTTTTGGTTACCCTGAAAAAAATTGTATATTACTTGGATAAACTAGGGAAAAAAGATGAAAAGCTTACCCTTCACAGAAGATTGTCTGTGCTTAGGAAAAAATATAACCAGATGGTTAATTATTAA 1698 0.3999 MKGSCLLPSNSLTGIRTSKKLPHVLSLCELKSISCFSVCNQKQIYSQKLYFIPIKTASVRVCISRSSVGSLECGGTGPHSDAYSGFSAPDDQQRIGSLERELEELFDEVKRMIRMGNKSDAIDLLTANYEAVKESLNAGTKGIEEAAILDVIALGYMAVGDLKFVGSLLDMMKEIVDNLKDDAPRLDSILMHMGSMYATLNMFEKSLDTYQRAVYIMEGTYGRDSTLLITPYLGMAKVLGSFGKATKAIEIYQSVITLLGSSRGAESKDLVVPLLSLGNLLLKEGRANDAETHFTRVLDIYTKLYGQNDGRIGIAMSSLARVKSAQGKSDEAIQLFKRAIQVMKDSNYLSPDDSILEKMRVDLAELLHAAGRGQEGREVLEECLWITERYKGKEHPILVTHMINLATSYSRSKNYADAEHLLRRSLQIMIKQKGTDDQSISFPMLHLAVTLYHLKNDEEAEKLALEVLRIREKAFGKNSLPVGEALDCLVSIQTRLGKDDSELLELLRRILNIQEREFGYESEEVLVTLKKIVYYLDKLGKKDEKLTLHRRLSVLRKKYNQMVNY 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g02142 565 Coils Coil 95 115 - -
Viun9g02142 565 Gene3D Tetratricopeptide repeat domain 355 563 IPR011990 GO:0005515
Viun9g02142 565 Gene3D Tetratricopeptide repeat domain 112 351 IPR011990 GO:0005515
Viun9g02142 565 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) 103 548 - -
Viun9g02142 565 ProSiteProfiles TPR repeat profile. 313 346 IPR019734 GO:0005515
Viun9g02142 565 ProSiteProfiles TPR repeat profile. 187 220 IPR019734 GO:0005515
Viun9g02142 565 SUPERFAMILY TPR-like 361 497 IPR011990 GO:0005515
Viun9g02142 565 SMART tpr_5 229 262 IPR019734 GO:0005515
Viun9g02142 565 SMART tpr_5 441 474 IPR019734 GO:0005515
Viun9g02142 565 SMART tpr_5 187 220 IPR019734 GO:0005515
Viun9g02142 565 SMART tpr_5 271 304 IPR019734 GO:0005515
Viun9g02142 565 SMART tpr_5 313 346 IPR019734 GO:0005515
Viun9g02142 565 SMART tpr_5 399 432 IPR019734 GO:0005515
Viun9g02142 565 Pfam MalT-like TPR region 187 468 IPR041617 -
Viun9g02142 565 SUPERFAMILY TPR-like 189 428 IPR011990 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g02142 - - gmx:100805230 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g02142 9 31141726 31145799 Viun9g02142 9 31141726 31145799 ECH