Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun9g02141 | ATGGAACGTTCTAGATCTAAGAGGAACTACTACTATGACCAAGATTATGATTCTGAGACCGTGGCCAGGACCAGGCCGCGCTATAATCACCACTACAGCGCCGGTGCCGGGAACCACCGCCACCGCGGCGGAGGCGCCCGTCATGCAAAGGCGCAGGACTCGCAGCTCAGCGTCACAACCAGCTACCGCATTCTGTGCCACGACATGAAGGCCGGCGGCGTGATAGGAAAGTCCGGCAGCATTATAAAGTCTATAAGGCAGCACACCGGCGCGTGGATCAACGTGCACGAGCTCATGCCTGGGGATGAGGAGCGGATCATCGAGATTTCGGACACGCGCCGGCGAGACCCCGAGGGGAGAATGCCAACGTTCTCGCCGGCGCAGGAGGCGCTGCTGCTGATCCACGAGCGGATTCTGGAGAGCGACGCGGCTTTTGGTGTGGCGGAGGAGGAGGAGGAGTACAACGGGAGGGGCGGCGGCGGCGGGAGGGACCGCGTGGCGACGAGGCTGGTGGTGTCGAGAATGCATGTGGGGTGTTTGTTGGGGAAGGGAGGGAAGATTATTGAACAAATGAGGATGGAAACCAAGACGCAGATTAGGATACTCCCTAGAGATCACAACCTTCCCCGTTGTGTTTCCATGTCTGAAGAGATTGTTCAGGTAGTAGGTGATGTAAATGCTGTAAAGGATGCTATAGCTAATATATCATCACGGTTGAGGGAGAGTCAGCACCGGGACCGAAGTCATTTCCATGGACGTGTACATTCACCAGAGCGATTTTTCTCTCCCGACAATGATTATATTCCTCATGTGACTAGTGGATCTCGTAGATCATCTGTGGATGGGGCCACTTTTGGATCACGAGGTTCTAACACAACTAGCAGAAACAATAGTCACTCTGCAATGAATTACTTAATGGAGCCTGGGGCTGCTCCTGTTGCCGATGATGTGCAGGGCTACTATGGGGAGGAACTGGTTTTCCGTGTACTCTGTCCCGTTGAGAGAGTTGATCGTATAATTGGGGAATCAGGGGGAATTGTAGAGTTCCTTCAGAATGAGGTTGGTGTAGATGTTAAGGTCACTGATCCTGTTGGTGGTTCTGATGAACAGATAGTTATCATTACTTCAGAGGAGGGTCCTGATGATGAGCTGTTCCCAGCTCAAGAAGCTTTGTTACATATACAAACCCGCATTGTCGATCTTATTCTAGATAAAGACAATACTATAACCACCAGGCTTGTTGTCCCATCCAGCGAAATTGAATGCTTAGACGGAAAGGATGCTTCACTTTCAGAAATAAGGAGGTTGACTGGTGCTAATATTCAAATTTTGCCAAGAGACGAGCTACCTCCATGTGTTGCAAAAGCCGATGAACTTGTACAGATTGTAGGAGAGATTAAAGCAGCCCGAGATGCTGTTGTGGAGGTGACATCAAGATTAAGAAGTTACTTGTACAGGGATTTCTTTCAAAGGGACATAGTACCACAAGTTTCCTTGCCTGGTGTGGAGGCATCTTCTTCCAATAATTTAGTTCCAGTTACAGAAACTCTCACGACCTATCAAAATATGCAAACTGTTGCCGCAGCCCTTCCATCAAAGGAAACTGGAGGATCTAGCACTGAGATAGGAAAGCAGAAAGAAAGTGATCGCCGCGATGACGTGCTTAGTGGTTTAAATAGGATTGCTGTACCTCTTGTCACAAGGAGTACACTTGAGGTTGTTATACCAGAGTATGCAGTACCAAAGCTTATAGCAAAGTCCAAAAGCAAGCTTGCCCAAATAAGTGAGTTATCAGGAGCCAATGTAACCCTAGTAGAGGATAGACCAGACGTGACGCAGAAGATTATTCAGATATCTGGAACTCCAGAGCAGGCAGAGAGAGCCCAGAGCTTGCTGCAAGGGTTTATTTTGAGCACACAAGAAGACGGCCCTTAA | 1935 | 0.4925 | MERSRSKRNYYYDQDYDSETVARTRPRYNHHYSAGAGNHRHRGGGARHAKAQDSQLSVTTSYRILCHDMKAGGVIGKSGSIIKSIRQHTGAWINVHELMPGDEERIIEISDTRRRDPEGRMPTFSPAQEALLLIHERILESDAAFGVAEEEEEYNGRGGGGGRDRVATRLVVSRMHVGCLLGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVVGDVNAVKDAIANISSRLRESQHRDRSHFHGRVHSPERFFSPDNDYIPHVTSGSRRSSVDGATFGSRGSNTTSRNNSHSAMNYLMEPGAAPVADDVQGYYGEELVFRVLCPVERVDRIIGESGGIVEFLQNEVGVDVKVTDPVGGSDEQIVIITSEEGPDDELFPAQEALLHIQTRIVDLILDKDNTITTRLVVPSSEIECLDGKDASLSEIRRLTGANIQILPRDELPPCVAKADELVQIVGEIKAARDAVVEVTSRLRSYLYRDFFQRDIVPQVSLPGVEASSSNNLVPVTETLTTYQNMQTVAAALPSKETGGSSTEIGKQKESDRRDDVLSGLNRIAVPLVTRSTLEVVIPEYAVPKLIAKSKSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSTQEDGP | 644 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun9g02141 | 644 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 316 | 382 | IPR036612 | GO:0003723 | |
| Viun9g02141 | 644 | Gene3D | K Homology domain, type 1 | 163 | 244 | IPR036612 | GO:0003723 | |
| Viun9g02141 | 644 | Gene3D | K Homology domain, type 1 | 567 | 639 | IPR036612 | GO:0003723 | |
| Viun9g02141 | 644 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 56 | 110 | IPR036612 | GO:0003723 | |
| Viun9g02141 | 644 | ProSiteProfiles | Type-1 KH domain profile. | 568 | 632 | - | - | |
| Viun9g02141 | 644 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 560 | 638 | IPR036612 | GO:0003723 | |
| Viun9g02141 | 644 | ProSiteProfiles | Type-1 KH domain profile. | 59 | 131 | - | - | |
| Viun9g02141 | 644 | PANTHER | KH DOMAIN CONTAINING RNA BINDING PROTEIN | 53 | 278 | - | - | |
| Viun9g02141 | 644 | ProSiteProfiles | Type-1 KH domain profile. | 165 | 235 | - | - | |
| Viun9g02141 | 644 | SMART | kh_6 | 164 | 240 | IPR004087 | GO:0003676 | |
| Viun9g02141 | 644 | SMART | kh_6 | 407 | 481 | IPR004087 | GO:0003676 | |
| Viun9g02141 | 644 | SMART | kh_6 | 323 | 396 | IPR004087 | GO:0003676 | |
| Viun9g02141 | 644 | SMART | kh_6 | 567 | 637 | IPR004087 | GO:0003676 | |
| Viun9g02141 | 644 | SMART | kh_6 | 58 | 139 | IPR004087 | GO:0003676 | |
| Viun9g02141 | 644 | CDD | KH-I_PEPPER_rpt2_like | 410 | 481 | - | - | |
| Viun9g02141 | 644 | CDD | KH-I_PEPPER_rpt1_like | 324 | 392 | - | - | |
| Viun9g02141 | 644 | MobiDBLite | consensus disorder prediction | 272 | 298 | - | - | |
| Viun9g02141 | 644 | CDD | KH-I_PEPPER_rpt1_like | 59 | 132 | - | - | |
| Viun9g02141 | 644 | ProSiteProfiles | Type-1 KH domain profile. | 324 | 391 | - | - | |
| Viun9g02141 | 644 | Gene3D | K Homology domain, type 1 | 58 | 141 | IPR036612 | GO:0003723 | |
| Viun9g02141 | 644 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 161 | 246 | IPR036612 | GO:0003723 | |
| Viun9g02141 | 644 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 401 | 489 | IPR036612 | GO:0003723 | |
| Viun9g02141 | 644 | Pfam | KH domain | 62 | 110 | IPR004088 | GO:0003723 | |
| Viun9g02141 | 644 | Pfam | KH domain | 570 | 633 | IPR004088 | GO:0003723 | |
| Viun9g02141 | 644 | Pfam | KH domain | 168 | 236 | IPR004088 | GO:0003723 | |
| Viun9g02141 | 644 | Pfam | KH domain | 327 | 379 | IPR004088 | GO:0003723 | |
| Viun9g02141 | 644 | MobiDBLite | consensus disorder prediction | 531 | 551 | - | - | |
| Viun9g02141 | 644 | Gene3D | - | 323 | 484 | - | - | |
| Viun9g02141 | 644 | CDD | KH-I_PEPPER_rpt2_like | 168 | 240 | - | - | |
| Viun9g02141 | 644 | MobiDBLite | consensus disorder prediction | 34 | 54 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Viun9g02141 | Viun-Chr9 | 31118221 | 31123826 | Transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun9g02141 | K21444 | - | gmx:100804167 | 1118.22 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Viun9g02141 | 9 | 31118221 | 31123826 | Viun9g02141 | 9 | 31118221 | 31123826 | ECH |