Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01913 ATGCTCCACAACAAGTCCTTTGTCAAGAAAACCAGGGCAGGCAAAGTCATGAAGCAAGTGCGGGAGCACTACCTGCGCGACGACATATACTGCGGGGCACCGTTTTGCACCGTTTGCGATACTTCGGGTGCTCGCCTCAACGCTTCCCCTTCCACCACCATTCTCGTCGTGGATACCAATGTCGTGCTCAATCAGATTGATTTGCTGGAGAATCAAGCATTGGATAACATTGTGGTGTTGTCCATTGTGTTGGAAGAGGTTAAAAACAAGAATATGGCTGTTTACAACCGTTTAAGAGCTCTCTGTAGCAATGCCACGAAGAAGTTCTATGTTTTTTCCAATGAGTACCACAGGGATACATATGTTAAGGAAATGAGTGGGGAAACTAAAAATGATAGGAATGATAGAGCTATCCGAGTGGCTACTCAGTGGTATCAGAACCATCTTGGTGGTGGAGTAAAGGTTTTGCTTATAACTAATGATAGAGAGAACAAAAGGAAGGCCAGTGAAGAGGGCATTTTTGCTGAAACAGTTGAGTCATACGTCAAGTCTTTAGACCAACCTGATCTACTTGATCTGCTTGTGCGGCCTGCATCAGAAGATGTGAACATGGAAGAGGTTGAAGATCATAGACCATCCAAGAGGAAAGTGATCTATTCAGAGCATAAGCCAATGTCAGAAATCACTTCTGGTTTGCATCGTGGAATATATCATCAAGGGAAGCTTCGTGTAAACCGTTACAATCCATTTGAAGCATATGTTGGGAGGGAGAGCATTGGTGATGAAATAGTTATTTATGGGCGCTCAAACATGAACCGAGCTTTTGATGGAGATATTGTGGCAGCTGAACTTCTGCCACAGGACCAGTGGCAAGAAGTCTCATCTCTATCTATAGCCGGTGAAGAAGATGAGAATGAGGACGAAGATGTTCATCTAGCTCCTAATAGTGCTGATGTTGCACCTAGGACTATTCCTCCGCAGGGTTCTTCTGGACAAGTAAATGCTGTACCGAGTCGTCCTTCTGGTCGCATTGTTGGTATTATAAAGAGGAATTGGCATTCGTATTGTGGATCTTTAGAGCCAATGCCTTTGCCTGCAGGCAGTGGTGGAATTGCCCATGCCTTGTTTGTCTCCAAAGATCGCAGAATTCCCAAGATTCGAATTCAAACACGCCAACTTGAGAACCTTTTGGATAAGAGGATTATTGTTGCAGTTGATTCTTGGGATCGTCAATCTAGATATCCATCAGGCCATTATGTGCGAACTATAGGGGACATAGGTGATAGGGATACTGAAAGTGAGGTGGTTTTGATAGAAAATGATATAAATACTCGACCATTCTCTTCGCAAGTGCTGGCATGCTTGCCACCATTACCGTGGTTGGTCTCTTCTGAAGATTTGTCCAATCCTATCAGGCAGGACTTGCGTCATCTGCTTGTGTTCAGTGTCGATCCTCCAGGCTGCAAGGATATTGATGATGCACTCCATTGTCACGCTCTTCCAAATGGAAACTTTGAAGTTGGAGTTCATATTGCTGATGTTACTAATTTTGTTCATCCTGGTACTCCACTTGATGATGAGGCTTCCCAGAGGGGTACATCTGTCTACCTTGTGGAGCGGCGAATAGACATGCTTCCCAAACCTCTTACGGAGGACATATGTTCTCTTCGTTCCGATGTGGAAAGGCTCGCATTCTCTGTCATTTGGGAAATGACACCTGAAGCAGACGTAATTTCCACCAGATATACAAAAAGTGTCATAAAATCTTCTGCAGCATTGTCTTATGTTGAAGCACAAGCAAGGATGGATGATAGTCGACTGAAGGATCCCATCACTACAGGTTTGAGGAATATGAATAGTTTAGCTAAGAAAATGAGATTGAGGCGCATTGAGAGAGGAGCTTTGACTCTTGCATCTGCTGAAGTCAAATTTCAAATTGACACAGAGACTCATGACCCTCTTGATATTGGAATGTACCAGATCCGGGAGGCCAACCAAATGGTGGAGGAATTTATGCTTGCTGCTAATGTTTCCGTTGCACAACAAATTCTTAAAAGTTTTTCGTTATGCTCATTATTAAGGCGTCATCCAACACCAACCAGAGAGATGCTTGAACCCTTATTACAGACCGCTGCTGCAGTTGGCTTGCACTTGGATGTTTCGTCATCAAAAGCATTGGCCGATTCTCTTGACCATGCTGTGGGTGATGATCCATACTTCAATAAGTTAATCCGTATACTGGCAACTAGGTGCATGAGTCAGGCGGTTTATTTCTGCAGTGGGGATCTTAGCCCTCCAGAATATCATCATTATGGGCTTGCAGCTCCTTTATATACCCATTTCACATCACCTATTAGAAGATATGCAGATGTCATTGTGCACAGGCTACTTGCTGCTTCTCTTGGAATATCAAAGTTACCGTCTGTATTTCAAGACAGACTCCAGCTCAGTAGTATTGCTGACAATTTAAATTATCGGCACAGGAATGCCCAGTATGCAGGGCGAGCATCTGTAGAATTGCATACTCTAATTTATTTCAGGAATAGGCCTACAGACACGGAGGCTAGAATAGTGAAAATAAGATCTAATGGCTTTTTTGTGTTTGTTCCCAAATATGGCATAGAAGGACCTATATATTTGACAAAAGCCGGAAAGGGAAATGGAGAATGGTATGTAGATGAGCAACAGCAGAAAATAAAAAAGATGGATGGTAGCCTTTCATACAGCGTTTTGCAGACAGTCCAAATTCACATGGAGGTTGTGGAGCCTCAACCTAACCGTCCCAAACTTCAGCTTACTCTCATCTAG 2808 0.4348 MLHNKSFVKKTRAGKVMKQVREHYLRDDIYCGAPFCTVCDTSGARLNASPSTTILVVDTNVVLNQIDLLENQALDNIVVLSIVLEEVKNKNMAVYNRLRALCSNATKKFYVFSNEYHRDTYVKEMSGETKNDRNDRAIRVATQWYQNHLGGGVKVLLITNDRENKRKASEEGIFAETVESYVKSLDQPDLLDLLVRPASEDVNMEEVEDHRPSKRKVIYSEHKPMSEITSGLHRGIYHQGKLRVNRYNPFEAYVGRESIGDEIVIYGRSNMNRAFDGDIVAAELLPQDQWQEVSSLSIAGEEDENEDEDVHLAPNSADVAPRTIPPQGSSGQVNAVPSRPSGRIVGIIKRNWHSYCGSLEPMPLPAGSGGIAHALFVSKDRRIPKIRIQTRQLENLLDKRIIVAVDSWDRQSRYPSGHYVRTIGDIGDRDTESEVVLIENDINTRPFSSQVLACLPPLPWLVSSEDLSNPIRQDLRHLLVFSVDPPGCKDIDDALHCHALPNGNFEVGVHIADVTNFVHPGTPLDDEASQRGTSVYLVERRIDMLPKPLTEDICSLRSDVERLAFSVIWEMTPEADVISTRYTKSVIKSSAALSYVEAQARMDDSRLKDPITTGLRNMNSLAKKMRLRRIERGALTLASAEVKFQIDTETHDPLDIGMYQIREANQMVEEFMLAANVSVAQQILKSFSLCSLLRRHPTPTREMLEPLLQTAAAVGLHLDVSSSKALADSLDHAVGDDPYFNKLIRILATRCMSQAVYFCSGDLSPPEYHHYGLAAPLYTHFTSPIRRYADVIVHRLLAASLGISKLPSVFQDRLQLSSIADNLNYRHRNAQYAGRASVELHTLIYFRNRPTDTEARIVKIRSNGFFVFVPKYGIEGPIYLTKAGKGNGEWYVDEQQQKIKKMDGSLSYSVLQTVQIHMEVVEPQPNRPKLQLTLI 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01913 935 FunFam Exosome complex exonuclease RRP44 homolog A 352 427 - -
Viun9g01913 935 Gene3D - 9 193 - -
Viun9g01913 935 SUPERFAMILY Nucleic acid-binding proteins 216 424 IPR012340 -
Viun9g01913 935 FunFam Exosome complex exonuclease RRP44 9 193 - -
Viun9g01913 935 ProSitePatterns Ribonuclease II family signature. 770 794 IPR022966 -
Viun9g01913 935 FunFam Exosome complex exonuclease RRP44 homolog A 206 314 - -
Viun9g01913 935 Gene3D - 207 313 - -
Viun9g01913 935 Gene3D - 352 427 - -
Viun9g01913 935 SMART RNB_2 472 803 IPR001900 GO:0003723|GO:0004540
Viun9g01913 935 Pfam PIN domain 55 178 IPR002716 -
Viun9g01913 935 Pfam Dis3-like cold-shock domain 2 (CSD2) 374 441 IPR041505 -
Viun9g01913 935 Pfam Rrp44-like cold shock domain 220 310 IPR033771 -
Viun9g01913 935 SUPERFAMILY Nucleic acid-binding proteins 430 848 IPR012340 -
Viun9g01913 935 CDD PIN_Rrp44-like 9 181 - -
Viun9g01913 935 PANTHER RIBONUCLEASE 21 932 - -
Viun9g01913 935 Pfam S1 domain 853 921 IPR033770 -
Viun9g01913 935 Gene3D - 852 935 IPR012340 -
Viun9g01913 935 FunFam Exosome complex exonuclease RRP44 homolog A 852 935 - -
Viun9g01913 935 Pfam RNB domain 472 801 IPR001900 GO:0003723|GO:0004540
Viun9g01913 935 SUPERFAMILY Nucleic acid-binding proteins 852 931 IPR012340 -
Viun9g01913 935 SUPERFAMILY PIN domain-like 54 187 IPR029060 -
Viun9g01913 935 SMART PIN_9 53 166 IPR002716 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01913 Viun-Chr9 29044491 29058537 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01913 K12585 - gmx:100806652 1753.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01913 9 29044491 29058537 Viun9g01913 9 29044491 29058537 ECH