Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01903 ATGGCTGCGCGAGCCCTATTGACCAGGAAAACCCTAGCATCGGTGCTCCGCAAAGACGCGAGGCCTCTCGGAGTAGGCGCAGCGGTGGCTACTCATTCCCGCGGTTTGCATGTGTACACGTTACCTGATCTGGAATACGACTATGGCGCACTGGAGCCAGCCATCAGCGGCGAAATCATGCAGCTCCACCACCAGAAGCACCATCAGACTTACATCACCAACTACAACAAGGCTCTTGAGCAGCTCCAAGATGCCGTTGCCAAGGCCGATTCCTCTGCCGTCGTTAAGCTCCAGGCCGCCATCAAGTTCAATGGCGGAGGTCATATCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAAGGAGGTGGTGAGCCACCCAAGGGTTCACTGGGATGGGCTATTGACACGCATTTTGGCTCTTTTGAAGCATTGATACAAAAAGTTAATGCAGAAGGTGCAGCATTGCAGGGGTCTGGTTGGGTGTGGCTTGGTCTGGACAAAGAGTTGAAGAGGCTTGTAGTTGAAACCACTGCCAACCAGGACCCACTGGTTACCAAGGCACCAAATTTGATTCCTTTGCTTGGTATTGATGTTTGGGAGCATGCGTACTACTTACAGTACAAGAATGTTAGACCAGATTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAATGATGTGTATGAGAAAGAGAGCTCTTAG 720 0.4931 MAARALLTRKTLASVLRKDARPLGVGAAVATHSRGLHVYTLPDLEYDYGALEPAISGEIMQLHHQKHHQTYITNYNKALEQLQDAVAKADSSAVVKLQAAIKFNGGGHINHSIFWKNLAPVREGGGEPPKGSLGWAIDTHFGSFEALIQKVNAEGAALQGSGWVWLGLDKELKRLVVETTANQDPLVTKAPNLIPLLGIDVWEHAYYLQYKNVRPDYLKNIWKVINWKYANDVYEKESS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01903 239 Gene3D Fe,Mn superoxide dismutase (SOD) domain 56 119 IPR036324 -
Viun9g01903 239 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 123 236 IPR036314 -
Viun9g01903 239 Coils Coil 72 92 - -
Viun9g01903 239 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 36 120 IPR036324 -
Viun9g01903 239 PIRSF MnSOD_FeSOD 17 239 IPR001189 GO:0004784|GO:0006801|GO:0046872
Viun9g01903 239 ProSitePatterns Manganese and iron superoxide dismutases signature. 200 207 IPR019833 GO:0004784|GO:0006801|GO:0046872
Viun9g01903 239 FunFam Superoxide dismutase 56 119 - -
Viun9g01903 239 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 39 119 IPR019831 GO:0004784|GO:0006801|GO:0046872
Viun9g01903 239 PANTHER SUPEROXIDE DISMUTASE 2 31 237 - -
Viun9g01903 239 Pfam Iron/manganese superoxide dismutases, C-terminal domain 129 231 IPR019832 GO:0004784|GO:0006801|GO:0046872
Viun9g01903 239 FunFam Superoxide dismutase 120 238 - -
Viun9g01903 239 PRINTS Manganese superoxide dismutase signature 42 53 IPR001189 GO:0004784|GO:0006801|GO:0046872
Viun9g01903 239 PRINTS Manganese superoxide dismutase signature 158 166 IPR001189 GO:0004784|GO:0006801|GO:0046872
Viun9g01903 239 PRINTS Manganese superoxide dismutase signature 198 210 IPR001189 GO:0004784|GO:0006801|GO:0046872
Viun9g01903 239 PRINTS Manganese superoxide dismutase signature 63 76 IPR001189 GO:0004784|GO:0006801|GO:0046872
Viun9g01903 239 PRINTS Manganese superoxide dismutase signature 102 115 IPR001189 GO:0004784|GO:0006801|GO:0046872
Viun9g01903 239 Gene3D - 120 239 IPR036314 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01903 Viun-Chr9 28942696 28947103 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01903 K04564 - gmx:100101896 451.825