Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01899 ATGTTGGCGTTCTCCAAGTTCAGGAAAGCAGCGGAGGTCTCCTGCGTATTCCGTCGAAGCCAAAAGCTTCCCACATACCTCCGAAGATTTTCCCTTCCGTCCGAGGAATCTCCCTCTTCGGACCCGCAGTTGCCGCTTCGTTTCTGCATCTCGTTGGCGCTCAAGTTCGAGACTTTATCCAGCGGCAAATACCGTGCTTTGGTGAGTGAGGTCCTTTGCACCAACAACTGGTTTTCCCTTTACTGGGAGGCCCTTGAGTATCTCAAGAAATCCGGAGTTTTAATAACTTCTGATTCGGTTTGTGTTTTGATTCGGGCGTATTGGCGAGTGGGTCTGACCGAGAAGGCTATAGAGTCGTTTGGTAGAATGGGTGAGCTTGGGTGCAGGCCCGATGCTCGTGCCTATAACACCATTTTGGATATTGTGTTTCAGAAAGAGTTGTTTGTGTTGGGTTTTGCGGTGTATAATCTGATGCTTAAGACCAACTGTGGTCCTAATGAACGCACTTTTGACATGCTGATTGGAGGGTTTTGTAGAAGTGATGATGTTAATGGTGCGCTTGAGATGCTCGAGGAGATGCGCCAAAGGGATGTAGAGCCGAGTGAGATGACATTTTTAGCTATTTTTTCTGGTCTGTGTCGTGGGGGGAGGGTACATGAGGCACACAGATTGTTTAATGTGATGAGAGAAAGTGGGCGCAAGCCTAATTTTATGTCTTATTGTGTTTTGTTTAATGGGTATTGCAAGATGGGGAGGTTAGATGAAGCCGTTTCGATTCTGCAATTGTTAGAGAGAGACAGGTTACCCCTTAATGTAAAGGGCTACAGTCATCTGATTGCTGGCTTTTTTAGGGAAAGGAGATACAATGAAGCGCATTCGTGGTATGGAAGGATGCTTAAGAAGGGTATTGTTCCAGATGTTGTTTTGTACACAATTTTGATACGGGGTTTGTCGAGTGAGGGCAGGATTGGTGAAGCTGTGAACATGTTTTGTGAGATGACCCGGCGAGGCTTAGTTCCTGATGCTGTTTGTTACAATGAAGTTATTAAAGGTCTCTGTGACGCTAATCTTTTGGATCGAGCACGAGCTCTCCAACTTCAAATTTCTGAGCATGAAGGGTTTCATAATGTTTGCACGCATACCATTCTCATCTGTGACTTGTGTAAGAGAGGAATGGTTGCCGAGGCACAAGAAATATTTAATCAGATGGAGAAGCCTGGGTGTTTACCTTCAGTTGTAACCTTCAATGCTCTTATATATGGACTGTGCAAGGCTGGTAAACTGGAGGAGGCACAACTCATGTTGTACAAGATGGAGATTGGGAGAAGTCCTTCGTTATTCTTCCGGCTTTCTCAGGGTTCTGATCAGGTTTTAGATGGTGTTAGTCTCAAGAAAAAGGTGGAGCAAATGTGTGAAGCTGGACAGATTTTGGAAGCTTACAAGTTTCTCATTCAACTTGCTGATAGTGGGGTTATGCCCGACATTGTGACGTACAATGTTCTGATCTACGGCCTTTGCAGAGCTTCTAAGGTTAATGGGCTGCCAGAGAAGAGGACGCACTGA 1563 0.4549 MLAFSKFRKAAEVSCVFRRSQKLPTYLRRFSLPSEESPSSDPQLPLRFCISLALKFETLSSGKYRALVSEVLCTNNWFSLYWEALEYLKKSGVLITSDSVCVLIRAYWRVGLTEKAIESFGRMGELGCRPDARAYNTILDIVFQKELFVLGFAVYNLMLKTNCGPNERTFDMLIGGFCRSDDVNGALEMLEEMRQRDVEPSEMTFLAIFSGLCRGGRVHEAHRLFNVMRESGRKPNFMSYCVLFNGYCKMGRLDEAVSILQLLERDRLPLNVKGYSHLIAGFFRERRYNEAHSWYGRMLKKGIVPDVVLYTILIRGLSSEGRIGEAVNMFCEMTRRGLVPDAVCYNEVIKGLCDANLLDRARALQLQISEHEGFHNVCTHTILICDLCKRGMVAEAQEIFNQMEKPGCLPSVVTFNALIYGLCKAGKLEEAQLMLYKMEIGRSPSLFFRLSQGSDQVLDGVSLKKKVEQMCEAGQILEAYKFLIQLADSGVMPDIVTYNVLIYGLCRASKVNGLPEKRTH 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01899 520 PANTHER OS03G0856100 PROTEIN 153 438 - -
Viun9g01899 520 Pfam PPR repeat family 207 249 IPR002885 -
Viun9g01899 520 Pfam PPR repeat family 130 179 IPR002885 -
Viun9g01899 520 Pfam PPR repeat family 376 424 IPR002885 -
Viun9g01899 520 Pfam PPR repeat family 305 354 IPR002885 -
Viun9g01899 520 Gene3D Tetratricopeptide repeat domain 147 265 IPR011990 GO:0005515
Viun9g01899 520 Gene3D Tetratricopeptide repeat domain 333 452 IPR011990 GO:0005515
Viun9g01899 520 Pfam PPR repeat 275 303 IPR002885 -
Viun9g01899 520 Pfam PPR repeat 101 128 IPR002885 -
Viun9g01899 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Viun9g01899 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Viun9g01899 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Viun9g01899 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 96 130 IPR002885 -
Viun9g01899 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Viun9g01899 520 Pfam PPR repeat 490 512 IPR002885 -
Viun9g01899 520 Gene3D Tetratricopeptide repeat domain 64 146 IPR011990 GO:0005515
Viun9g01899 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 201 235 IPR002885 -
Viun9g01899 520 NCBIfam pentatricopeptide repeat 239 271 IPR002885 -
Viun9g01899 520 NCBIfam pentatricopeptide repeat 169 202 IPR002885 -
Viun9g01899 520 NCBIfam pentatricopeptide repeat 204 236 IPR002885 -
Viun9g01899 520 NCBIfam pentatricopeptide repeat 378 411 IPR002885 -
Viun9g01899 520 NCBIfam pentatricopeptide repeat 413 438 IPR002885 -
Viun9g01899 520 NCBIfam pentatricopeptide repeat 275 307 IPR002885 -
Viun9g01899 520 NCBIfam pentatricopeptide repeat 308 342 IPR002885 -
Viun9g01899 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 236 270 IPR002885 -
Viun9g01899 520 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Viun9g01899 520 Gene3D Tetratricopeptide repeat domain 266 332 IPR011990 GO:0005515
Viun9g01899 520 Gene3D Tetratricopeptide repeat domain 453 514 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01899 Viun-Chr9 28896268 28898313 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01899 216 513 Miscellaneous Gene Families AT4G11690 26.923 1.09e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01899 - - lang:109340115 639.417