Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01885 ATGGGTGAAGAGAGCCCGCGAGTTGGTGGGTTTTCTGCTGGTCTGGCTGTGATATTGAATGGTGAGGACGGTAAGAAAAATTTGCCAAAAACTCGGTTACTTTCTTGCTGTGACGATTTGGGTCAGCAATCGGTGGAGCGAACCCTTGAGTATGTATTTGGCCTCCCAAACAGATCACTCAATTCTTTGACTGGTCCGGTTGATCGTGGTTGTATTCACTCTGTCATTAGAAATGATTTCTCAAGATATAATGTGAAATTAAGTGATTCTTATAGTGAAAGTGATGGAGTTTGTTATATTAATGGTAAAAGTGGTAACGGGCCTGATATTATAGGCCTAGAAGAATCCAGCATCTGCGGTGATATTAAAGTTATCAAGTCACCTTTTCTTATAGAGAGCATGGCAATGTTCAGTAGTGCCAGGGCTAGTGCTTGTGTTTGGAAGGGAAAATGGATGTATGAAGTTATGTTGGAAACATCTGGCATACAGCAACTTGGTTGGGCCACTCTTTCTTGCCCTTTCACTGACCATAAAGGTGTTGGTGATGCCGATGATTCATATGCTTATGATGGGAGGCGAGTTAGCAAGTGGAACAAGGATGCTGAGACATATGGACAGTCATGGGTTGTTGGTGACATCATTGGATGTTGTATAGATTTAGATCGAGATGAAATATTATTCTACAGGAATGGTAATTCACTTGGGGTGGCATTCCAAGGAATTCGAAAAATGGGTCCTGGTTTTGGTTATTATCCAGCTGTTTCTCTTTCCCAGGGTGAAAGATGTGAGTTAAACTTTGGAGCTCGACCCTTTAAGTATCCAATTGAGGGCTACCTTCCTCTTCAGGCTCCCCCCTGTAAGAACTACTTTGTCACCCAATTGCTGCAATGCTGGTCAAGACTGTTGGACATGCATTCAGTGGAACGAGCTGATCATTCCCTAGTTCAGAAATTGAGAAGAGTGAAGAGGTTTGATTCATTGGAAGAAATTTTCCATCCTGCTTCTTATGCTATATGCGAGGAATTATTCTCCATACTTGAAGCAGATGTTGGGATCACAGAATATGTGGCTTGGGGTCCACTGTTGTCGTTCATGTTTGATGTTTTTGGTTTGCATGCACCCCATGATTACTCAAGCTTGGATAAAGTAGTTGAGGTTATGCTACAATTTGAAGGATCCCATGTGCTATTTAAACACATCCTAAATGCTCTTTCATTTGGTTGTAAAATAGCCTTATTAATTTTAACTGAATGTCCTTACTCTGGATCATATTCTCACCTTGCATTGGCATGTCATCTACTAAGACGAGAGGAACTTATGGTGCTTTGGTGGAAGTCACCCGATTTTGAATTCGTGTTTGAAGGTTTTCTTTCACAAAAGACTCCAAACAAACATGATCTCGACTTCATGATACCAACTGTTTGGTGGCCTGGTTCGTGTGAAGATGCATCTTATGAAGGTAACATGATGTTGACAACCACAGCTTTGTCTGAATCAGTCAACAAGATTGAGGAGAAGCACAGGGACCTTTGTCGCTTAGTGATACAATTTATACCACCTACAAATCCTCCCCAGCTACCTGGAGCAGTATTTAGGACATTTTTACAGAGCCTTCTACTGAAGAACAGAGGAGCAGAACGAAATATTCCTCCTCCTGGAGTTTCTAGCAACTCGGTTCTTGTTTCTATTTACACAGTTGTACTCCATTTTTTATCCGAAGGATTTGCCTTGGGTGATATCTGTGGCTGGTTAAAGAGCTGCAAAACAGATGTTGGTTTCCTTCATAGAGGTGGTGAGCAAAGCTTTCCTGTTCATTTATTTCTTAAAAGTGATCCCCATAGAGCTGATATTTCCAGGCTTGGGGGATCCTATAGCCATTTATCAAAGCTACACCCAACATTTGATCATGAAATGGAAGTGATTCAATGGGATGAAGGTTGCATGGATAATGAAGAAACCAGGGTCACTCATTCAACCAGGCAGAAACCATGCTGTTGCTCTAGTTATGATTCTGATTTTACAAGGAACTTCAAGGTTCCTGCTAAATATCTGGCCAAAGGTTCTCGCGGTCATTGTAGCTCTATTCCAGAGAGACCTGCTCATGTCACTGCGGAATGCAGTGATGGGACTTTGAATGATGAGATAACTGATAAACCTAGCCCCAGTGATCAATCTGAACCTGAGTATGGTTACCGCCAAGTGCTCCATATGAAGTCTGTACCAAAGGATACTAATATCTCTACAGCTACACTACGAGAAGAAGAGCTACTTGATGCTTTGCTATGGTTGTATCATGTTGGTCTTGCTCCAAATTTTAAGCAGGCATCATACTACATGACTCATCAGACACAGTCAATTTCCCTTTTGGAGGAAACTGATAAGCAAATACGAGAGCGAGCTTGCAGTGAGCAATTGAAGCATTTGAAAGAAGTTCGAAATGGATATAGAGAAGAGGTTATTGATTGTGTTAGGCATTGTGCTTGGTACCGCATCTCTTTATTTTCACGGTGGAAGCAGAGAGGAATGTATGCAATGTGCATGTGGGTTGTCCAGTTGCTACTGGTTCTTAGCAACATGGATTCAGTGTTTATATACATCCCTGAATATTATCTGGAAGCTTTGGTTGATTGCTTTCATGTGTTGCGGAAAAGTGATCCCCCCTTTGTTCCATCCACAATTTTCATAAAGAGAGGACTTACTTCATTTGTCACCTTTGTAGTTACCCATTTCAATGATCCAAGAATATCAAGTGCAGATCTCAGGGACCTTCTTCTTCAGTCTATATCTGTCCTGGTGCAGTACAGGGAATATTTGGCTACCTTTGAGAGCAATGAGGCAGCCACCCAAAGGATGCCGAAGGCTTTATTATCAGCATTTGATAACAGATCTTGGATACCAGTGACGAACATACTCTTACGATTATGCAAGGGTTCTGGTTTCAGTTTTTCAAAGAATGGAGAATCATCTTCATCATCAGTTCTTTTTCAAAGGTTGCTGAGGGAAGCTTGCATGAGTGATGAAGGATTGTTTTCATCTTTTCTAAACCGACTGTTCAATACGCTAAGCTGGACCATGACTGAATTTTCAGTTTCTGTTCGAGAAATGCAAGAAAAGTACCAGGTAATAGAGTTTCAGCAAAGGAAATGTTGTGTCATATTTGATCTTTCATGTAATCTTGCAAGGATTCTGGAGTTCTGCACTCGTGAGATTCCTCAAGCATTCCTGTCTGGACCAGACACTAACTTACGAAGGTTAACCGAGTTGGTTGTATTTATCCTAAATCACATTACTTCTGCTGCCGATGCTGAATTCTTTGACTTGTCCGTTAGACGGCATAGTCAATCTCCAGAAAAAATAAACCGAGGCATGATATTGGCCCCTCTAGTAGGGATCATCTTAAATTTATTGGATGCTACAAATTCTGAAGAATATCGAGAAAACAATGATCTTTTAGATGTTTTCGCAAGCATGGACTGTCCAGATACTGTTCAGTATGGATTCCAGTATCTTCTGGATTATAACTGGGATGGATCCTTTCGAGGGGAAGCTTATGTAGCAAAATATGAGCAGCTAGAGAATTTTCTTAGTCTCCTTACTTGCCGCACAGTATTACCACATGGTAAAGTGGATAGTGTGGGAGATACAGATCTTGATGATAGGTTGTGCTGCATATGTTATGCATGTGAAGCAGATGCCCAAATTGCACCTTGTTCACACAAGTCTTGCTATGGCTGTATAACCAGGCACCTTTTGAACTGCCAGAGATGTTTCTTTTGCAACGCAACAGTGACAAGTGTTAGCAAAATTGGTTAG 3813 0.4125 MGEESPRVGGFSAGLAVILNGEDGKKNLPKTRLLSCCDDLGQQSVERTLEYVFGLPNRSLNSLTGPVDRGCIHSVIRNDFSRYNVKLSDSYSESDGVCYINGKSGNGPDIIGLEESSICGDIKVIKSPFLIESMAMFSSARASACVWKGKWMYEVMLETSGIQQLGWATLSCPFTDHKGVGDADDSYAYDGRRVSKWNKDAETYGQSWVVGDIIGCCIDLDRDEILFYRNGNSLGVAFQGIRKMGPGFGYYPAVSLSQGERCELNFGARPFKYPIEGYLPLQAPPCKNYFVTQLLQCWSRLLDMHSVERADHSLVQKLRRVKRFDSLEEIFHPASYAICEELFSILEADVGITEYVAWGPLLSFMFDVFGLHAPHDYSSLDKVVEVMLQFEGSHVLFKHILNALSFGCKIALLILTECPYSGSYSHLALACHLLRREELMVLWWKSPDFEFVFEGFLSQKTPNKHDLDFMIPTVWWPGSCEDASYEGNMMLTTTALSESVNKIEEKHRDLCRLVIQFIPPTNPPQLPGAVFRTFLQSLLLKNRGAERNIPPPGVSSNSVLVSIYTVVLHFLSEGFALGDICGWLKSCKTDVGFLHRGGEQSFPVHLFLKSDPHRADISRLGGSYSHLSKLHPTFDHEMEVIQWDEGCMDNEETRVTHSTRQKPCCCSSYDSDFTRNFKVPAKYLAKGSRGHCSSIPERPAHVTAECSDGTLNDEITDKPSPSDQSEPEYGYRQVLHMKSVPKDTNISTATLREEELLDALLWLYHVGLAPNFKQASYYMTHQTQSISLLEETDKQIRERACSEQLKHLKEVRNGYREEVIDCVRHCAWYRISLFSRWKQRGMYAMCMWVVQLLLVLSNMDSVFIYIPEYYLEALVDCFHVLRKSDPPFVPSTIFIKRGLTSFVTFVVTHFNDPRISSADLRDLLLQSISVLVQYREYLATFESNEAATQRMPKALLSAFDNRSWIPVTNILLRLCKGSGFSFSKNGESSSSSVLFQRLLREACMSDEGLFSSFLNRLFNTLSWTMTEFSVSVREMQEKYQVIEFQQRKCCVIFDLSCNLARILEFCTREIPQAFLSGPDTNLRRLTELVVFILNHITSAADAEFFDLSVRRHSQSPEKINRGMILAPLVGIILNLLDATNSEEYRENNDLLDVFASMDCPDTVQYGFQYLLDYNWDGSFRGEAYVAKYEQLENFLSLLTCRTVLPHGKVDSVGDTDLDDRLCCICYACEADAQIAPCSHKSCYGCITRHLLNCQRCFFCNATVTSVSKIG 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01885 1270 Pfam E3 ubiquitin-protein ligase RKP N-terminus 1 139 IPR045737 -
Viun9g01885 1270 CDD SPRY_RNF123 139 267 IPR035773 -
Viun9g01885 1270 Pfam Ubiquitin elongating factor core 769 959 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Viun9g01885 1270 Pfam SPRY domain 150 268 IPR003877 GO:0005515
Viun9g01885 1270 ProSiteProfiles B30.2/SPRY domain profile. 79 271 IPR001870 -
Viun9g01885 1270 ProSiteProfiles Zinc finger RING-type profile. 1222 1256 IPR001841 -
Viun9g01885 1270 SMART SPRY_3 148 270 IPR003877 GO:0005515
Viun9g01885 1270 PANTHER RING FINGER AND SRY DOMAIN-CONTAINING 29 1268 IPR045129 GO:0004842
Viun9g01885 1270 MobiDBLite consensus disorder prediction 709 727 - -
Viun9g01885 1270 CDD RING-HC_RNF123 1221 1263 - -
Viun9g01885 1270 SUPERFAMILY Concanavalin A-like lectins/glucanases 133 283 IPR013320 -
Viun9g01885 1270 MobiDBLite consensus disorder prediction 707 728 - -
Viun9g01885 1270 FunFam E3 ubiquitin-protein ligase RKP 120 294 - -
Viun9g01885 1270 FunFam E3 ubiquitin-protein ligase RNF123 1214 1270 - -
Viun9g01885 1270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1216 1269 IPR013083 -
Viun9g01885 1270 SUPERFAMILY RING/U-box 1216 1265 - -
Viun9g01885 1270 Gene3D - 123 296 IPR043136 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01885 K12169 - gmx:100800617 2426.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01885 9 28659404 28669961 Viun9g01885 9 28659404 28669961 ECH