Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01879 ATGTGTGAACCCTCTTCTTCAGAAGGAGAAGCAGAGACACCACCCAACAACCTGATCCCGTCCCTCCCAGACGACGTCGCTTTGAACTGCATAGCACGCATCCCTCGCTGTCACCACCCAACCCTATCCCTCGTTTCCAAACCCTTCCGCACCCTCCTCTCTACCCCTCTCTTCTTCACCACGCGCTGCCTCCTCAACTGCACGCAACCCTTCCTCTACCTCACTCTCCGCACGCGCGCCTCCTCCCTCCAGTGGTTCACGCTCCACCGCACGCTCCCTAGCCCCCTCTTAGCGCCCCTCCCCCCAATTCCCTCCCCCGCCGTGGGCTCCGCCTACGCCGTCCTCGGCTCCACCATCTACGTCCTCGGCGGCTCCATCAACGATGTCCCCTCCCCGCACGTCTGGCTCCTCGACTGCCGCTTCCACCGCTGGCTTCCGGGTCCAAGCATGCGCGTCGCGCGGGAGTTCGCCGCCGCGGGGGTCCTCGATGGAAAGATTTACGTCCTCGGTGGCTGCGTCGCTGACACGTGGTCCCGCTCCGCCCACTGGGCGGAGGTCCTGGACCCCGACGTTGGGCGCTGGGAGAGGGTGGCCAGCCCCTCCGAGGTCCGAGAGAAGTGGATGCACGCCAGCGCGGTCGTCGGCGACAAGGTGTACGCGATGGCGGACCGCGGCGGCATCGCGTACGAGCCGCGCAGCGGATCGTGGGAGAGCGTAGGGGGAGAATTGGATCTCGGGTGGAGAGGTAGGGCGTGCGTGGTGGAGGGTATTTTGTACTGCTACGACTATTTGGGGAAAATCAAAGGGTTCGATGTGGGGCGCGGGGTGTGGGAGGAGTTGAAGGGGTTGGAGAAGGGTTTGCCTAGGTTTCTGTGTGGAGCCACCATGGCTGATTTGGGTGGGAAATTGTGTGTGGTGTGGGAGTGCCAAGGGAATGGGAAAGAAATGGAGATTTGGTGCGCTGAGATTGGAGTGCAGAAGAATTCAGATGGAGAACTGTGGGGTCAACTTGGTTGGTTTGGGAAAGTCCTCTCTGTTCCCAAAGGCTCCTCTGTTGTCCATTGTTCTTCTGTTTCCTTGTGA 1083 0.615 MCEPSSSEGEAETPPNNLIPSLPDDVALNCIARIPRCHHPTLSLVSKPFRTLLSTPLFFTTRCLLNCTQPFLYLTLRTRASSLQWFTLHRTLPSPLLAPLPPIPSPAVGSAYAVLGSTIYVLGGSINDVPSPHVWLLDCRFHRWLPGPSMRVAREFAAAGVLDGKIYVLGGCVADTWSRSAHWAEVLDPDVGRWERVASPSEVREKWMHASAVVGDKVYAMADRGGIAYEPRSGSWESVGGELDLGWRGRACVVEGILYCYDYLGKIKGFDVGRGVWEELKGLEKGLPRFLCGATMADLGGKLCVVWECQGNGKEMEIWCAEIGVQKNSDGELWGQLGWFGKVLSVPKGSSVVHCSSVSL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01879 360 Gene3D - 69 332 IPR015915 GO:0005515
Viun9g01879 360 SUPERFAMILY F-box domain 13 102 IPR036047 GO:0005515
Viun9g01879 360 Pfam Kelch motif 154 200 IPR006652 GO:0005515
Viun9g01879 360 Pfam Kelch motif 107 151 IPR006652 GO:0005515
Viun9g01879 360 SMART kelc_smart 118 164 IPR006652 GO:0005515
Viun9g01879 360 SMART kelc_smart 165 217 IPR006652 GO:0005515
Viun9g01879 360 SUPERFAMILY Kelch motif 95 340 IPR015915 GO:0005515
Viun9g01879 360 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 7 344 - -
Viun9g01879 360 CDD F-box_AtAFR-like 18 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01879 Viun-Chr9 28611466 28612935 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01879 12 344 Miscellaneous Gene Families AT4G33900 38.227 1.67e-63 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01879 - - gmx:100798508 634.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01879 9 28611466 28612935 Viun9g01879 9 28611466 28612935 ECH