Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01871 ATGGCTTCAACTTCAGTCACCACTTTCTCCATCTACTCCGAATCCCAATCAAAGTTCCGCAATTTCCTAGGCCACCCACTGATTCCTAACCGCAATAAACCCACATCAATTTCGGTTCCACCTGCCATGGTTCGCGCCACCCTTTTCTCGACATTCACTTGCTCCCAAACCCCTTGCACACCCTGCTCGAATTTTTCACCGGGAAGAGCTTTATTCAAGTTCCTCTCAGAAAAGGTGGCATTTTTCCTCATTGGGTCGTTTCTGTTGTCGGGTGCCTTCAGCAAGAGAGCTGCTTTCGCAGAAGCATCGCCTTCTGTGAGTTCTGATGTTGTGTTGGAGGAGAAGGTGAAGCCCGCAGAAGAGAAAAATGAGGAAGAGGAAAGCGATGAAGAGGAGGAGATGTGGGAGAAGGTTTTGGAGAAGGACCCGAAAAATGTCGAGGCTCTCAAGGTGGTTTTGTATGGGAAAATTAAGAGAGGGAAGTCAAAGGAGGCTGTGAAGTTTGTGGAGGATTTAATCGCTGCGGAGCCGAAGGAGGTTGAATGGAGGCTTTTGCTTGCACTTTGTTATGAGACAATGGGGCAATTGAGTAAAGCTAAAAGATTGTTCAGGGAAATCTTGAAGAGAAGGCCTCTTCTACTCAGAGCTTTGCATGGTTTGGCTATGGCAATGCATAAAAACCATGAAGGTCCTGCTATATTTGAAATGCTAAATAAGGCTCAAGAATTAGCTTCTCGTGAAAACAGAGTTACTGAGGAGAGAAATATAAGAATCTTAATTGCACAAATGCATGCTGTACAGGGTAATTTGGAGGAGGGCATAAAGAGATTGCAAGAATTGATTGATCAAAATCCTCGAGATTTTAGGCCTTATATTTGTCAGGGAATAATATACAGTCTCTTGGGTAAAACTGAGGAAGCTGCACAGCAGTTTGAAACATATCAAAGTCTTGTGCCTGAAGAATTTCCTCAGAGAGGATTTCTGGATGATGTTACCATAGCAGCAAAAAAAACATCCTTTGAAAAGTTTAATAAAGAATTTAGAAATCAATTTTCTTATCGGAAATAA 1068 0.427 MASTSVTTFSIYSESQSKFRNFLGHPLIPNRNKPTSISVPPAMVRATLFSTFTCSQTPCTPCSNFSPGRALFKFLSEKVAFFLIGSFLLSGAFSKRAAFAEASPSVSSDVVLEEKVKPAEEKNEEEESDEEEEMWEKVLEKDPKNVEALKVVLYGKIKRGKSKEAVKFVEDLIAAEPKEVEWRLLLALCYETMGQLSKAKRLFREILKRRPLLLRALHGLAMAMHKNHEGPAIFEMLNKAQELASRENRVTEERNIRILIAQMHAVQGNLEEGIKRLQELIDQNPRDFRPYICQGIIYSLLGKTEEAAQQFETYQSLVPEEFPQRGFLDDVTIAAKKTSFEKFNKEFRNQFSYRK 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01871 355 Gene3D Tetratricopeptide repeat domain 92 329 IPR011990 GO:0005515
Viun9g01871 355 PANTHER TPR REPEAT-CONTAINING PROTEIN PA4667 126 320 - -
Viun9g01871 355 SMART tpr_5 180 213 IPR019734 GO:0005515
Viun9g01871 355 SMART tpr_5 288 321 IPR019734 GO:0005515
Viun9g01871 355 SMART tpr_5 254 287 IPR019734 GO:0005515
Viun9g01871 355 Pfam Tetratricopeptide repeat 157 212 - -
Viun9g01871 355 Pfam Tetratricopeptide repeat 264 317 - -
Viun9g01871 355 SUPERFAMILY TPR-like 143 320 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01871 Viun-Chr9 28507996 28512063 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01871 - - gmx:100795327 558.91