Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01860 ATGTTCTTCACACTCCAGATATCTACTCTTCTTTATACGCTTCCTCTGTTACTACTCGATGTCACTTTGTGTCTCTACTTTTATTTGTACCTCCCTATGAAGCTGCTTGGCGGGAACGCAGAGAATTTGGACGCGGAAATAGAGCAATTGCTGAATGCGGAGAAGCATGCGAGGCTCGCCGGCAATGTCGCCGCCACAAGAAATGCCGTCACTGAAATTTTACGGCTATGTTTCGAAGCGCGTGCTTGGGACACTCTCAATGACCAGATTGTTCTCTTATCCAAACGACGTGGCCAACTTAGGCAGGCTGTAACAGCGATGGTCCAGCAAGCTATGCAATATATCGATGAGACACCAGATGTTAAAACTTGTATAAGCCTAATCGAAACCTTGAACAGTGTATCTGCAGGAAAGATATATGTTGAGATTGAGAGAGCTCGATTGATCAAGAAACTTGCAAAAATTAGGGAAGAACAAGGACTTATTGATGAAGCTGCTGATTTGATGCAAGAAGTTGCGGTAGAAACTTTTGGTGCCATGGCAAAAACTGAGAAAATCGCTTTCATTCTTGAACAAGTTCGTTTGTGTCTAGACCGACAGGATTATGTTCGTGCTCAGATACTCTCAAAAAAGATTAATGAAAGAGTATTTGATGCTGATGTTTCAAAGGAAAAGAAAAAGCCTAAAGAAGGTGATAATGTTGTTGAAGAAGCTCCTGCAGATATACCATCTCTGCCAGAGTTGAAGCGTATCTATTATGAACTAATGATTCGGTACTATTCCCATAAAAATGATTATCTTGAAATTTGCCGATGCTACAAGGCAATATATGAGATTCCATCTGTCAAAGAAAATCCTGCCGAGTGGATTCCAGTCCTGAGGAAAATATGCTGGTACTTGGTTCTATCACCACATGATCCAATGCAGTCAAGCCTTCTCAATTCCACCTTGGAGGATAGGAATCTGTCTGAGATTCCAAACTTTAAGTTACTGTTGAAACAGTTGGTTACCATGGAGGTTATCCAGTGGACAACTCTTTGGGATTCATACAATGATGAGTTTGAGAATGAGAATAACCTTGGAAGGAATTTGGGTGAAGCAGCAAAAGATCTGAAGGAAAGAGTAATTGAACATAATATTCTTGTTATATCGAAATACTATGCAAGGATTACTTTGAAGAGACTTGCAGAGCTTTTGTGTCTCAGTGTTCAGGAAGCTGAGAACCATCTTTCAGATATGGTTGTGTCCAAGGCATTGGTGGCAAAAATTGATAGACCCATGGGAATAGTTTGTTTCCAAAGAGCCAAGGATAGCAACGATGTTCTTAACTCATGGGCAGTAAACTTGGAGAGACTGCTTGATCTTGTGGAGAAGAGCTGCCACCAAATACACAAGGAAACCATGGTGCATAAGGCTGCCTTGAAGGGTTAA 1431 0.4123 MFFTLQISTLLYTLPLLLLDVTLCLYFYLYLPMKLLGGNAENLDAEIEQLLNAEKHARLAGNVAATRNAVTEILRLCFEARAWDTLNDQIVLLSKRRGQLRQAVTAMVQQAMQYIDETPDVKTCISLIETLNSVSAGKIYVEIERARLIKKLAKIREEQGLIDEAADLMQEVAVETFGAMAKTEKIAFILEQVRLCLDRQDYVRAQILSKKINERVFDADVSKEKKKPKEGDNVVEEAPADIPSLPELKRIYYELMIRYYSHKNDYLEICRCYKAIYEIPSVKENPAEWIPVLRKICWYLVLSPHDPMQSSLLNSTLEDRNLSEIPNFKLLLKQLVTMEVIQWTTLWDSYNDEFENENNLGRNLGEAAKDLKERVIEHNILVISKYYARITLKRLAELLCLSVQEAENHLSDMVVSKALVAKIDRPMGIVCFQRAKDSNDVLNSWAVNLERLLDLVEKSCHQIHKETMVHKAALKG 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01860 476 ProSiteProfiles PCI domain profile. 268 437 IPR000717 -
Viun9g01860 476 Gene3D - 365 441 IPR036388 -
Viun9g01860 476 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 366 452 IPR000717 -
Viun9g01860 476 Pfam PCI domain 326 433 IPR000717 -
Viun9g01860 476 Pfam 26S proteasome regulatory subunit RPN5 C-terminal domain 439 471 IPR040896 -
Viun9g01860 476 SUPERFAMILY "Winged helix" DNA-binding domain 365 442 IPR036390 -
Viun9g01860 476 Coils Coil 33 60 - -
Viun9g01860 476 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 40 470 IPR040134 -
Viun9g01860 476 FunFam 26S proteasome non-ATPase regulatory subunit 12 363 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01860 Viun-Chr9 28282929 28289845 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01860 K03035 - gmx:100793755 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01860 9 28282929 28289845 Viun9g01860 9 28282929 28289845 ECH