Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01779 ATGAAGATAAAATCCCATTCTTCCTTCTTCCTTCTGTTTCTCATAGCCATTACTCACACAAATGTTTGTTTAGCAGAATGTGATAACGTGAAGGACTATTGCCCTACAAGTACGAAACCCCAAAAGCAAGCCATATTCATCAATGGCCTCTCCTGTGAGAACCCAGATAACACAAGCGCCCATGATTTCAAGAGCAATGAGCTAAGCAAACCTGGTTCCAGGGACGATTTCGGTGCACTGGTTAAAATTGTTACTGCTTCCAAGTTTGTGGGGCTCAACACACTTGGCCTTGCAATTGGTAGAAGTGACATTGAAGTGGATGGGCTTGTGAACCTCCACAATCACCCCAGAGCCACTGAGATGGTGTATGTGAACCAAGGTAGGTTGCTGGCTGCGTTTCTCAACACCCAAAACCAGCTCTTCCAGAAGAATCTCAATGCTGGTGACGTCTTTATCATCCCCAAGGGCTTGTTCCATTTCTTCCTCAACCGTGGTGAACAAGTTGCAACTCTGTTCTCAGTCTTCAACAGCCAAAATCCAGGGCTAGGATCACTCTCCGCCCAACCCTCTCAATCTGAAAACACACTCCAATTGGTTGAGAAGATAAAGATGAAGCTCAATTCACTCTCTCACTCACAACTTCATGGTGATAGTGATTTGACTTCGGTGTTGCTGGATATCGTTTCTCACTATTAG 696 0.4497 MKIKSHSSFFLLFLIAITHTNVCLAECDNVKDYCPTSTKPQKQAIFINGLSCENPDNTSAHDFKSNELSKPGSRDDFGALVKIVTASKFVGLNTLGLAIGRSDIEVDGLVNLHNHPRATEMVYVNQGRLLAAFLNTQNQLFQKNLNAGDVFIIPKGLFHFFLNRGEQVATLFSVFNSQNPGLGSLSAQPSQSENTLQLVEKIKMKLNSLSHSQLHGDSDLTSVLLDIVSHY 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01779 231 Pfam Cupin 77 196 IPR006045 -
Viun9g01779 231 SMART Cupin_1_3 66 208 IPR006045 -
Viun9g01779 231 PRINTS Germin signature 143 163 IPR001929 GO:0030145
Viun9g01779 231 PRINTS Germin signature 176 191 IPR001929 GO:0030145
Viun9g01779 231 PRINTS Germin signature 113 133 IPR001929 GO:0030145
Viun9g01779 231 Gene3D Jelly Rolls 25 210 IPR014710 -
Viun9g01779 231 CDD cupin_OxOx 28 186 IPR001929 GO:0030145
Viun9g01779 231 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 24 192 - -
Viun9g01779 231 ProSitePatterns Germin family signature. 108 121 IPR019780 GO:0030145
Viun9g01779 231 SUPERFAMILY RmlC-like cupins 71 191 IPR011051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01779 Viun-Chr9 27285162 27286310 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01779 11 182 Miscellaneous Gene Families AT5G20630 35.632 1.44e-30 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01779 - - var:108332215 415.616