Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01778 ATGGAATCCGACAAAACAACCTTTGCAGCTCTGTTCCTCACCACCCTCAAGCGCCCCTCCTGGGCCCTCCTCTTCCTCCTCTTCACCCTCCTCACCTTTCTCTCCCTCCACCTTCCCGCCAGGCCCGTCTGGCTCCTCGCCGGTCCCCACCCTGGGCCCTATCCAACATCATGCGCAGCCTTCTTCCGCGACGTTCCGCCCAGGAAGGTCGTCATGTCCATCCAGGACTTCGGCGGCGTCGGCGACGGCACCACTTCCAACACTGAATCGTTCCGGAGGGCGGTTCAGTACATGCAGCGCTTCCAGAACCGCGGTGGGGGCCAGCTGAATATCCCCGCCGGAACCTGGCTCACCGGCAGCTTCAATCTCACGAGTAATTTCACGCTTTTTCTTGAACACGGTGCCGTTATTCTCGCTTCACAGGACCCGAAAGAATGGCCGATAATTGAGGCATTGCCATCTTATGGAAGAGGGAGAGAGAGGCTTGGAGGAAGGCATATTAGCCTTATTCATGGAAATGGCATTAGCAATGTTGTTATTACAGGACAAAATGGGACAGTTGATGGTCAAGGAAAGATGTGGTGGGAACTTTGGTGGAACAGAACATTGGAGCATACAAGAGGGCACCTCCTTGAACTAATTAACTCGGATAATGTTCTCATATCAAACCTCACCTTTCGAAATTCTCCTTTTTGGACCATCCATCCTGTTTATTGCAGGAATGTTGTGATCAAAGGGATGACAATCTTGGCTCCCCTTAATGCTCCAAATACTGATGGCATAGACCCAGACTCAAGTTCCAATGTATGCATTGAAGATAACTACATAGAAAGTGGGGATGATCTTGTTGCCATTAAGAGTGGTTGGGATCAATATGGAATCAACGTGGCCCATCCTTCTACAAATATTATAGTGAGGAGAATATCAGGCACTACCCCCACTTGTTCTGGAGTAGGCATAGGAAGTGAAATGTCTGGTGGAATTTCAAATATCATAATTGAGAATTTGCATGTGTGGGATTCTGCAGCTGGTGTTCGGATAAAATCTGACAAGGGCAGAGGAGGCTATGTAGCTAATGTTTCTATAAGTGACATAAGAATGGAGAGAGTCAAGATACCCATTAGGTTCAGTAGAGGTTCAAATGACCATCCTGATGATGGGTGGGATCCAAAAGCTGTTCCTAGATTCAAAGATATTTTGATCAGTAATGTGGTCAGCATAAATTCAACAAAAGCCCCAGTTTTGGAAGGTGTAGAGGGTTCATCATTTGAAGGCTTATGCTTCAAAAACATTACTCTGCATGGTGTTGCCTTATCCAAAAGATGGCGTTGTGAATATGTCTCTGGTTTTGCCACCGAGGTTTTCCCTGTTCCTTGTCTCGAGTTGCGGAACAATAGCTATTCATCCTGGTGTTCACCTTCCTGA 1425 0.4758 MESDKTTFAALFLTTLKRPSWALLFLLFTLLTFLSLHLPARPVWLLAGPHPGPYPTSCAAFFRDVPPRKVVMSIQDFGGVGDGTTSNTESFRRAVQYMQRFQNRGGGQLNIPAGTWLTGSFNLTSNFTLFLEHGAVILASQDPKEWPIIEALPSYGRGRERLGGRHISLIHGNGISNVVITGQNGTVDGQGKMWWELWWNRTLEHTRGHLLELINSDNVLISNLTFRNSPFWTIHPVYCRNVVIKGMTILAPLNAPNTDGIDPDSSSNVCIEDNYIESGDDLVAIKSGWDQYGINVAHPSTNIIVRRISGTTPTCSGVGIGSEMSGGISNIIIENLHVWDSAAGVRIKSDKGRGGYVANVSISDIRMERVKIPIRFSRGSNDHPDDGWDPKAVPRFKDILISNVVSINSTKAPVLEGVEGSSFEGLCFKNITLHGVALSKRWRCEYVSGFATEVFPVPCLELRNNSYSSWCSPS 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01778 474 Gene3D - 60 451 IPR012334 -
Viun9g01778 474 PANTHER PECTIN LYASE-RELATED 40 469 - -
Viun9g01778 474 SUPERFAMILY Pectin lyase-like 66 463 IPR011050 -
Viun9g01778 474 SMART pbh1 216 238 IPR006626 -
Viun9g01778 474 SMART pbh1 266 298 IPR006626 -
Viun9g01778 474 SMART pbh1 357 378 IPR006626 -
Viun9g01778 474 SMART pbh1 239 265 IPR006626 -
Viun9g01778 474 SMART pbh1 300 322 IPR006626 -
Viun9g01778 474 SMART pbh1 328 349 IPR006626 -
Viun9g01778 474 Pfam Glycosyl hydrolases family 28 168 448 IPR000743 GO:0004650|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01778 Viun-Chr9 27280921 27284595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01778 1 462 Glycoside Hydrolase AT4G33440 66.953 0.0 637
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01778 - - vra:106780727 928.702
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01778 9 27280921 27284595 Viun9g01778 9 27280921 27284595 ECH