Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01385 ATGGGCGGATCGATTTCAAAACGAAGGAGTTCTAGGCGACGTTCGTCCTCAAATTTTTTTCCTCGGTATCAATCGCCTTATTTGCCACAAAGCCAAGATCAAGGGTCTGTGAGGCATTACGGGTATTCATCTCCAAGCAGTGGTGGTGGTCCTGCTCCAGAACAAGGAAAGAGATCAGATGGGAAGTATTCAAGGATAGGTGATAATTATAAGAGCTTAGACCAGGTAACTGAAGCTCTAGCAAATGCTGGCCTAGAATCTTCCAATCTCATTGTTGGTATTGATTTTACAAAGAGCAATGAGTGGACAGGTGCAAGGTCATTTCAAAGGAGATGCCTGCATCACATTGGTCATGAACAAAATCCGTATGAGCAAGCTATATCTATTATTGGGAAAACACTATCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGATGCATCTACTCATGATCAAGAAGTTTTTAGTTTCTATCCTGATGAGAGATTTTGCCAAGGATTTGAAGAAGTGTTGGGACGATATAGGGAATTGGTTCCTCAGTTAAAACTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTCGAGCAAAGTGGAGGCCAATACCATGTCTTAGTGATTATAGCTGATGGGCAGGTGACGAGAAGTGTTGACACCGAGCATGGTCAGTTAAGTGCACAAGAAAAGAAAACTGTGGAAGCGATTGTGAAAGCTAGTGAATATCCCTTGTCAATCATATTAGTTGGAGTTGGAGACGGGCCGTGGGATATGATGAAACAATTTGACGATAACATCCCAGCCCGAGCGTTTGATAATTTCCAGTTTGTGAATTTCACAGAAATAATGTCGAAGAACATGGATCGGTCAAGAAAGGAAACTGAGTTTGCATTGGCTGCTTTGATGGAAATACCATCCCAGTACAAGGCTACAATAGAGCTTAATATATTGGGTACTCGAAGCGGGAAAGATATCGAAAGGGTTCCCCTGCCACCGCCTCTATACGGTGCAGCATCCTTCAATTCCCCGAAAACTTCACGTCAGAACAGTTTCCGTCCCAGTGCACCATCTAGCAGACATGATGTTAGCAGGAACCCTCCTGCAACTTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACCAATCCTAAAGATATGGCCTTTGGTTGTGGGCATCAGACATGCTGTGAGTGCGGACAAGATCTTGAGTTATGCCCCATTTGCAGGAGCAGCATCGATACTAGAATAAAACTTTATTAG 1287 0.4336 MGGSISKRRSSRRRSSSNFFPRYQSPYLPQSQDQGSVRHYGYSSPSSGGGPAPEQGKRSDGKYSRIGDNYKSLDQVTEALANAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLGRYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETEFALAALMEIPSQYKATIELNILGTRSGKDIERVPLPPPLYGAASFNSPKTSRQNSFRPSAPSSRHDVSRNPPATSASDNQVCPICLTNPKDMAFGCGHQTCCECGQDLELCPICRSSIDTRIKLY 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01385 428 PANTHER COPINE FAMILY PROTEIN 1 27 405 - -
Viun9g01385 428 SMART VWA_4 87 290 IPR002035 -
Viun9g01385 428 SUPERFAMILY RING/U-box 379 424 - -
Viun9g01385 428 MobiDBLite consensus disorder prediction 345 380 - -
Viun9g01385 428 MobiDBLite consensus disorder prediction 16 43 - -
Viun9g01385 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 364 428 IPR013083 -
Viun9g01385 428 MobiDBLite consensus disorder prediction 347 380 - -
Viun9g01385 428 MobiDBLite consensus disorder prediction 1 66 - -
Viun9g01385 428 SUPERFAMILY vWA-like 88 271 IPR036465 -
Viun9g01385 428 ProSiteProfiles Zinc finger RING-type profile. 385 418 IPR001841 -
Viun9g01385 428 Pfam Copine 112 326 IPR010734 -
Viun9g01385 428 Pfam Zinc finger, C3HC4 type (RING finger) 382 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01385 Viun-Chr9 14362184 14365551 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01385 K16280 - gmx:100809850 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01385 9 14362184 14365551 Viun9g01385 9 14362184 14365551 ECH