Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01344 ATGCCACCCTACTTTTGCTTTTTATGTGTTACGAGTTGTAAAGAGCCAAGTTTCTTCCACGCTATGTTGAGGCTTCACGTGTGTGTGTTGGAGGCCAAGGACCTTCCTGTGAGGGCTACGTACGTGAAGCTTAGACTCGCCAAGTCCAAGGCCAAGACAAGGATTTTGACAAACACGTGCAACCCCGTTTGGAACCAGGAGTTTTGTTTCAAGGTGCATGATGCTGAGGACGTGCTCGTTGTGTCTGTTGTTAGTCATGTGAATGAGTGCAGAGTGAGCAATGGTTATGTCGGTTTCCTGGGGAAAATTCTCCTTACTGTTTATCTTCGTGGTAAAGGCCGTGCTTTTACCAAGCATAAGCATTCTTCAAATTCAACTGTTGCAGTTGAGAACTCAAAGGAATTGGAAGGTCTTCACAGTTCATGTCGGGCACCTTGTGATAAAATGGGTGTAGGCAAACTGTTGAGGGTTATTGCGAATAGTCTGCATAAGATTTTGAAAAAGAAAGAAGGAAACTCGAAGCCCGGGGATTCTTCAGAACTATCATCCACGTTATTATCGGATCCTGAAGATAGTGTTCAGGAAAATTCACCTTCTTGTAGCTTTGAAGAAGCCCTTGCACAAATGGAATCAAGAGACAACAAACCTGAGATGCCTGAAAATTTATCGGGCGGTGTTCTAGTAGATCAGACTTATTTATTCTCTCCAAAGGACCTTAATTTGTTTCTTTTTGCACCCAAGTCACAGTTTCGTAAAGATTTGGCTGAGCTGCAGGGAATAACAAATGTGCAAGAAGGACCTTGGACATGGAAAAATGGAGACATGTCAAGTTTGACACGAGTTGTTACTTGTACAAAAGCTGCAACAAAATTGGTGAAGGAAGTTACTTGCACTGAGGAGCAAACGTACATTAGAGTGTGTAGAAAGGAATTTGCTATACTTTGTAATATAAGTACACCTGAAGCTCCATACGGGAATACATTTAGGATTGAATTGCTTTACAAGATAATGCCTGGTGAAGAGGTACCTTCAGGAGAGGAATCCTCTCATCTTGCTGTGTCATGGGGCATTGTCTTCCTCCAAAGCACAATGATGAAAGGCATGATAGAAAGTGGGGCAAGACAGGGATTGAAGGATAGTTTTAACCAGTTCTCCCAAAAACTAGCGCAGAACTTTAAGGTGCAAGATAAGGCAAATTTTTCAGACAAGGAACATTTTTTGGCAACTTTGCAGACTGAAGACCAGTGGCATTGGTGGCAGGAAGTTGCATACTTTTGTAATTTCACTGTGGTTTCCACCATTTTCATGTGTTTGTATGTGATGGTGCATATTTTTTATTGTAGTCCAAGTCCACCTCAGGGCTTGGAATTTAGGGGGCTTGAATTGCCAGATAGTTATGGGGAATTCATTATAGGTGGAATTTTATCCATCCAGTTGCAGCGTGTTTACAATATGCTGTCTCACTTTGTTCAAGCTAGATTTCAAATGGGAACTGACCATGGCCTCAAAGCTAATGGTGTTGGATGGGTTCTTACTGTGGCTTTAATTGAGGGGGTTGACTTGGCCTCCTTGGCATCAGAAGGGTTGTCAGATCCCTACGTAGTGTTAACCTGTAATGCACAAACAAGATCAAGCTCTGTCAAACTTCAAACATCGAATCCTCAATGGAATGAAATATTAGAGTTTGAAGCTATGGAAGAACCACCATCAGTTTTGGATGTGGAAGTGTTTGATTTTGATGGTCCATTTGACCAGGATGTTTCACTTGGACATGCTGAGATCAATTTCCTAAAGCACACATCAACTGAGTTGGCAGACATGTGGCTCTTGCTGGAAGGAAAACTTGCTCAATCTTCTCAGTCAAAGTTGCACCTGAGAATTTTCTTGGACAATAATAAAGGAGTTGAGACAATCAAGGAATATTTGGGGAAGATGGAAAAGGAAGTAGGCAAAAAGTTGAATCTTAGATCACCACAAAGGAGTTCTACATTCCAGAAATTGTTTGCATTACCTCCGGAAGAATTTCTCATAAAAGATTTAACTTGTTACCTCAAGAGAAAAATGCCTTTACAGGGTCGGCTGTTTCTTTCAGCAAGGATTCTGGGTTTTTATGCCAATTTCTTTGGACACAAAACCAAATTTTTCTTCCTTTGGGAAGACATTGAAGACATACAAGTGCTTCCTCCATCGTTGGCAACATTAGGAAGCCCTACATTGGTCATAATCCTGCGAAGTGGTCGAGGTATTGATGCAAGGCACGGTGCAAAGACTCAAGATGAAGAAGGGAGACTTAGGTTTCATTTTCAATCATTTTCTTCATTTGGTGCTGCTTGCAGAACAATAAAGGCCTTGTGGAGAACAAGAATTCTGAACCCCTATCAGAAAGAACAAATTACAGAAGAACATGATGATCAAGAAGGCTTTGTAATTCCAGAAGACTCAGCATCTGTCTTAGAGAATGAAGAAAACATGTCCAGAATCTTCTCTGCAGAAGTACCAATCAGGATGATATCTGTGATGGGAATTTTTGATGGAGGAACCCTGGAGCATAAAATTATGCAGAGAACAGGATGTATGAACTATGAAACAACGGCGTGGGAGCTAGTAAAACCTGAGGTGTTCGAGAGGCGTGTTTCTTACCAATTCAATCGACAAGTATCAACTTTTGGAGGTGAAGTCACAAGCACACAGCAAAAATCTCCAAATGCAGACACTGGAGGTTGGACTGTGGTTGAAGTTATGGCTCTTCACGGTGTCCCTTTTGCTGATCACTTTCATATTCATTTTAAGTTCGAAATTGAGCCATCACCTCTTGGTGAATGTGCTTGCAAGTGTGAAGCTTACATTAGTGTCATGTGGCTTAAGAGCTCCAAGTTTCAGCAGAGGATCAACCGCAACATAATAGCCAAGTTTAACCTTCGATTGAAGGAAATATTTGAACTGGTTCAGGAAGAGATTTTGATCATGTCTCAGAACTCAAATGGATAA 2988 0.4137 MPPYFCFLCVTSCKEPSFFHAMLRLHVCVLEAKDLPVRATYVKLRLAKSKAKTRILTNTCNPVWNQEFCFKVHDAEDVLVVSVVSHVNECRVSNGYVGFLGKILLTVYLRGKGRAFTKHKHSSNSTVAVENSKELEGLHSSCRAPCDKMGVGKLLRVIANSLHKILKKKEGNSKPGDSSELSSTLLSDPEDSVQENSPSCSFEEALAQMESRDNKPEMPENLSGGVLVDQTYLFSPKDLNLFLFAPKSQFRKDLAELQGITNVQEGPWTWKNGDMSSLTRVVTCTKAATKLVKEVTCTEEQTYIRVCRKEFAILCNISTPEAPYGNTFRIELLYKIMPGEEVPSGEESSHLAVSWGIVFLQSTMMKGMIESGARQGLKDSFNQFSQKLAQNFKVQDKANFSDKEHFLATLQTEDQWHWWQEVAYFCNFTVVSTIFMCLYVMVHIFYCSPSPPQGLEFRGLELPDSYGEFIIGGILSIQLQRVYNMLSHFVQARFQMGTDHGLKANGVGWVLTVALIEGVDLASLASEGLSDPYVVLTCNAQTRSSSVKLQTSNPQWNEILEFEAMEEPPSVLDVEVFDFDGPFDQDVSLGHAEINFLKHTSTELADMWLLLEGKLAQSSQSKLHLRIFLDNNKGVETIKEYLGKMEKEVGKKLNLRSPQRSSTFQKLFALPPEEFLIKDLTCYLKRKMPLQGRLFLSARILGFYANFFGHKTKFFFLWEDIEDIQVLPPSLATLGSPTLVIILRSGRGIDARHGAKTQDEEGRLRFHFQSFSSFGAACRTIKALWRTRILNPYQKEQITEEHDDQEGFVIPEDSASVLENEENMSRIFSAEVPIRMISVMGIFDGGTLEHKIMQRTGCMNYETTAWELVKPEVFERRVSYQFNRQVSTFGGEVTSTQQKSPNADTGGWTVVEVMALHGVPFADHFHIHFKFEIEPSPLGECACKCEAYISVMWLKSSKFQQRINRNIIAKFNLRLKEIFELVQEEILIMSQNSNG 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01344 995 ProSiteProfiles C2 domain profile. 2 118 IPR000008 -
Viun9g01344 995 SMART C2_3c 510 609 IPR000008 -
Viun9g01344 995 SMART C2_3c 24 117 IPR000008 -
Viun9g01344 995 ProSiteProfiles VASt domain profile. 223 396 IPR031968 -
Viun9g01344 995 Pfam C2 domain 24 103 IPR000008 -
Viun9g01344 995 Pfam C2 domain 510 609 IPR000008 -
Viun9g01344 995 SMART gram2001c 662 728 IPR004182 -
Viun9g01344 995 PANTHER BNAA05G37250D PROTEIN 24 88 IPR044511 -
Viun9g01344 995 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 509 633 IPR035892 -
Viun9g01344 995 CDD C2 25 77 - -
Viun9g01344 995 MobiDBLite consensus disorder prediction 169 200 - -
Viun9g01344 995 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 17 87 IPR035892 -
Viun9g01344 995 Pfam VAD1 Analog of StAR-related lipid transfer domain 827 968 IPR031968 -
Viun9g01344 995 Pfam VAD1 Analog of StAR-related lipid transfer domain 227 376 IPR031968 -
Viun9g01344 995 ProSiteProfiles C2 domain profile. 490 609 IPR000008 -
Viun9g01344 995 CDD C2 511 611 - -
Viun9g01344 995 PRINTS C2 domain signature 550 563 IPR000008 -
Viun9g01344 995 PRINTS C2 domain signature 572 580 IPR000008 -
Viun9g01344 995 PRINTS C2 domain signature 526 538 IPR000008 -
Viun9g01344 995 Pfam GRAM domain 664 743 IPR004182 -
Viun9g01344 995 Gene3D - 660 787 IPR011993 -
Viun9g01344 995 ProSiteProfiles VASt domain profile. 823 986 IPR031968 -
Viun9g01344 995 Gene3D C2 domain 17 133 IPR035892 -
Viun9g01344 995 Gene3D C2 domain 494 629 IPR035892 -
Viun9g01344 995 MobiDBLite consensus disorder prediction 176 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01344 Viun-Chr9 13448987 13453483 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g01344 511 586 Lipid Metabolism Gene Families AT5G17980 34.211 6.53e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01344 - - gmx:100811103 1559.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01344 9 13448987 13453483 Viun9g01344 9 13448987 13453483 ECH