Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g01246 ATGGCTTACTACGATTCTGCGCCTTCTGTCCCTCTCCTATGGAACTTCTCTCAAGTACTCGGCCAACAACTACCCAACGAGCCTCTCCAGAACGACGACATCATAACCACCATTGCTTTCGATAAGCGCGGCGATCATCTCGCCGTTGGCGATCGAGGTGGACGCGTTGTAATATTCGGAAGAGACGATCGAAAAAAGAATGTTTCGAGTAATCGAAGAAGGGATTTGGAGCAGCGGGATTTCGCCTCGCAGCCTCCCGAATTTCGTTACAAGACAGAATTTCAGAGCCACGAACCCGAGTTTGATTACCTAAAGAGTGTGGAAATTGAAGAGAAGATTAACAAAGTAAGGTGGTGGATGACCCACGACAGTTTGCAATTTATTCTTTCAACCAACGATAAAACAATTAAATTGTGGAAGGTTAAGGAGCATAAGGTGAAACAAGTTAAAGAAATGGCCCCTCCTTTGTGCTCAGAAAATATGTTTTTGGCTGGAAAAAGTTTCGTACCAGGGCTAGAAACCAAGTCTGCTGCTAATGGCTATCGCTTGGAATGGATAGAGAAGACGCCTAAGAATCATTTGCCGCCTCAGGACGTTGATAGCGAGATTGGTGGAATGGAAGACCCTTTTCACGCAAAGTGCCAAAAGGTGTATGCTTATGCTCACAGTTTCAAAATTAACTCCATCTCAAATAATAGTGATTATGAGACCTTTGTCTCGGCAGACGACCTTAGAATCAATTTGTGGAATCTTGAGGTCAGTGATCAGTGTTTCAACATTATTGACATGAAGCCATCAAACATGGAGGACCTTACCGAGGTCATAACATCAGCTGAATTTCATCCTTTACATTGTAACCTCCTTGCATATAGCAGCTCACAAGGTTTAATTCGTCTATCTGATTTGCGACATTCAGCAATATGTGACCATGCTTCAAGAATATTTCAACATGGAGAGAGTTATGGATCAAAGTCATTTTTTACAGAAATCACTTCTTCCATCTCAGACATAAAGTTTTTAAATGATGGCCAGCATCTTCTAAGTCGCAATTACATGAATATGAAGCTTTGGGACATGCGTAGGGAGTCATCTCCAGTCGCAATATTCAAAATTCACGAGCATCTGCGTCCTAAGTTGCCAGAGCTATATAATAATGACTGCATATTTGATAAATTTGAGTGCTGCTTTAGTGGTGATGGACTCCATTTTGCAACTGGTTCTTATAGCAATATCTTGCGGATATTCTCCCCAGGTTCTGGAAGGGAGGAAGGGATTAAACTAGAAATTAGAGGAAATTCTGATAGCTCACGTTGA 1314 0.4201 MAYYDSAPSVPLLWNFSQVLGQQLPNEPLQNDDIITTIAFDKRGDHLAVGDRGGRVVIFGRDDRKKNVSSNRRRDLEQRDFASQPPEFRYKTEFQSHEPEFDYLKSVEIEEKINKVRWWMTHDSLQFILSTNDKTIKLWKVKEHKVKQVKEMAPPLCSENMFLAGKSFVPGLETKSAANGYRLEWIEKTPKNHLPPQDVDSEIGGMEDPFHAKCQKVYAYAHSFKINSISNNSDYETFVSADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITSAEFHPLHCNLLAYSSSQGLIRLSDLRHSAICDHASRIFQHGESYGSKSFFTEITSSISDIKFLNDGQHLLSRNYMNMKLWDMRRESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNILRIFSPGSGREEGIKLEIRGNSDSSR 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g01246 437 Gene3D - 12 193 IPR015943 GO:0005515
Viun9g01246 437 Gene3D - 197 432 IPR015943 GO:0005515
Viun9g01246 437 FunFam Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B 30 173 - -
Viun9g01246 437 SMART WD40_4 100 140 IPR001680 GO:0005515
Viun9g01246 437 SMART WD40_4 254 301 IPR001680 GO:0005515
Viun9g01246 437 SMART WD40_4 22 60 IPR001680 GO:0005515
Viun9g01246 437 SMART WD40_4 362 416 IPR001680 GO:0005515
Viun9g01246 437 SMART WD40_4 320 358 IPR001680 GO:0005515
Viun9g01246 437 SMART WD40_4 211 250 IPR001680 GO:0005515
Viun9g01246 437 SUPERFAMILY WD40 repeat-like 31 422 IPR036322 GO:0005515
Viun9g01246 437 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 363 388 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 250 277 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 222 249 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 307 334 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 389 415 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 116 144 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 278 306 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 335 362 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 Pfam WD domain, G-beta repeat 213 250 IPR001680 GO:0005515
Viun9g01246 437 PIRSF PPA2_B55 5 435 IPR000009 GO:0000159|GO:0019888
Viun9g01246 437 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 11 431 IPR000009 GO:0000159|GO:0019888
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g01246 Viun-Chr9 12040648 12057708 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g01246 K04354 - gmx:100795137 766.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g01246 9 12040648 12057708 Viun9g01246 9 12040648 12057708 ECH