Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00801 ATGAAGGTCCGGTCGGTGAAGTTAAGGGAGGCGCACGGTGCCATTGGCGGCCGCGCGTCTTTCTGCTCCGTTCTGTGGGACCAGCAAGCCAGTCATTTGGTTACCGCTTCCTCTTCCGACATCTCCATCTGTATCCACGACCCCATTTCCCCCTCCATCTCTCCCAAAATCCTCCGCCACCACCGCGACGGCGTCACCGCCTTGGCTCTTAGCCCCAATTCCACTTGCCTCGCTTCCGGATCCATCGATCGCTCCGTCAAACTCTACAAGTTCCCTGGTGGAGAGTTTGAGAGAAACATTACAAGGTTTACACTCCCAATACGTTCCTTGGCATTTAACAAATCAGGGAGCATGGTTGCTGCTGCTGGTGATGACGAGGGTATCAAGCTTATTAATACATTTGATGGTACCATTACTAGGGTTCTTAAAGGACACAAAGGGTCTGTCACTGGCTTGGCTTTTGACCCTAATGGTGAATACTTAGCCTCTATGGATTCAACTGGAACTGTTATTTTGTGGGAGCTTCAGTCTGGGAAAATCATTCATAACCTCAAAGGCATAGCTCCTGACACTGGACTAGATATTTCAGCTGTGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCTTAGCTGTTCCTGGTTTGAAAAATGATGTTGTAATGTATGACAGGGACACTGCTGAGAAGTTGTTTTCTTTGAGAGGAGATCACATACAGCCAATATGTTTCTTGTGTTGGTCACCCAATGGCAAGTACATTGCTACCTCTGGTTTAGACAGGCAGGTTCTGATCTGGGATGTTAATAGGAAGCAGGACATTGACAGACAGAGGTTTGATGAAAGAGTGTGTTGCATGGCGTGGAAGCCAATTGGGAATTCCTTGGCTGTTGTGGATGTTATGGGGAAGTATGGTATTTGGGACAATGTTATTCCTTCGTCTATGAAGTCTCCAACTGAGGATATACCCGTGAAACACAAGAGCAATGGGGTTCTTTTGTTTGATGAGGAGGATCATGAAAATAGTGCAAGTGGAAGCTTGAGTGATATTGGTGAAAATAGTAATGAGGAATTTGAGCCAACAAGCAGGAAAAGATTGCGTAAACACTCCTTGAGTGAGGAAAATTTAGGTGAGGATGGATATGAGGAAATTGCATTGTATCCGAAGGTTGATTCTCACAACAAACGAAATCGATCAAGCAAGGAAAAATTGGATAGTGGGAATATGGGATTTAGAGGTACCATGATAACATCTAAGGCAAAAAGGCAGGAGGCATTTCAGCCAGGATCTACACCTTTTCAGCCTGGGAAAAGGCGTTTCTTATGCTACAACATGCTTGGATGTATAACCTCTATTGAACACGATGGATACTCCCATATTGAGATTGATTTTCATGATACTGGAAGCACTCCACGAGTTCCTTCAATGACTGATCATTTTGGATTCACAATGGCAGCATTGAGTGAGAGTGGGAGCGTCTTTGCAAATCCTTGTAAGGGGGAGAAGAACATGAGCACCCTCATGTATCGCCCATTTAGTAGCTGGGCTAACAATAGCGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTGAAGGTTGTTGCACTTGGCGCTGCTTGGGTTGCTGCCGTGACTAGTTTGAACTATCTTCGCATCTTTTCTGAGAGTGGTTTGCAGAAACATGTACTTTCACTAGATGGACCAGTGTTGACTGCATCCGGTTTCAAGGAGAAGCTTGCAGTTGTCACTCATGTCTTTGATTACCTTTCCTCAAATGATCAGATGCTAGAGTTTATCGTATTTAATATTCCTCAAGGGACCCAACTCCTTCAAGGTCGCTTACCAATATCTCCTGGTTCATCCCTAAGTTGGTTTGGGTTTAGTGAGGAAGGCCAACTGTGTTCATACGATTCGAAGGGTGTGCTAAGATCATATACAAGCCAATTTGGTGGCAGATGGGTCCCACTCTTCAGTGCTTTAAAAGAGAAGTCAAACGAAAACTACTGGGTGACGGGTTTGAATGCAAGCAAGTTATTTTGTGTGGTATGCAAAAAGCCTGAAGAGTTCCCTCAGGTCATGCCTAAGCCAGTTCTCACTCCGTTGAGTCTTTCATTTCCTCTTGCTTCCTCTGACTTGGGATCTGAAGTCCATGAAAACGAGTTTATGATGAACAACTTGCATCTCTTTTTGATTCAGAGAAGAATGGAAGAAATGGCATCTGTAGGTCTGGACACTACTTCACTGGATGACGATGCTTTCAATTTGGAAGCAGCGCAGGATAAATGTATACTGAGGCTTATAGCATCATGCTGCAACAGCAATAAGCTTGAGCGAGCAACTGAACTTGTGAAACTTTTGACTCTGGAAAAATCAATGAGAGGTGCAATAAAACTTGTTACTGCTCTGAAACTTCCAAACTTGGCCGAAAGGTTCAGCAGCATATTGGAGGAAAGGCTACTTGAGGAAGCAAAAAAAGCTACGGAAACCAACATCAAAGAAAACTGTGTTGCACCCATTAAAGCTGATGCTCTTCATAACGCAAGCAAGGCCTCAACTCGAACTGAATCATTAAATGCAGTTACTATGTCATCACCAAAATTATCTTCTCCATCATTCATAAAGAAAGACAAAACTCAAGAGGGAAGTAAAGCTGGCATAATCAGAAGTCCAATGGTAAATGAAACTATGAAGGGAAAGCAGACAGGGGAAGAAACAAGTGACAAGGTGGGGAAGGTGGGAGACATGACTCCTCATCCATCAAAGAAGAATGGACTTGACAAATCAGAGACTGGTTTGGGACAACCAAATCGTCCCTCCAATCCATTTTTGAAGTCTACTATCAAGTAA 2841 0.4407 MKVRSVKLREAHGAIGGRASFCSVLWDQQASHLVTASSSDISICIHDPISPSISPKILRHHRDGVTALALSPNSTCLASGSIDRSVKLYKFPGGEFERNITRFTLPIRSLAFNKSGSMVAAAGDDEGIKLINTFDGTITRVLKGHKGSVTGLAFDPNGEYLASMDSTGTVILWELQSGKIIHNLKGIAPDTGLDISAVNVLCWSPDGETLAVPGLKNDVVMYDRDTAEKLFSLRGDHIQPICFLCWSPNGKYIATSGLDRQVLIWDVNRKQDIDRQRFDERVCCMAWKPIGNSLAVVDVMGKYGIWDNVIPSSMKSPTEDIPVKHKSNGVLLFDEEDHENSASGSLSDIGENSNEEFEPTSRKRLRKHSLSEENLGEDGYEEIALYPKVDSHNKRNRSSKEKLDSGNMGFRGTMITSKAKRQEAFQPGSTPFQPGKRRFLCYNMLGCITSIEHDGYSHIEIDFHDTGSTPRVPSMTDHFGFTMAALSESGSVFANPCKGEKNMSTLMYRPFSSWANNSEWSMRFEGEEVKVVALGAAWVAAVTSLNYLRIFSESGLQKHVLSLDGPVLTASGFKEKLAVVTHVFDYLSSNDQMLEFIVFNIPQGTQLLQGRLPISPGSSLSWFGFSEEGQLCSYDSKGVLRSYTSQFGGRWVPLFSALKEKSNENYWVTGLNASKLFCVVCKKPEEFPQVMPKPVLTPLSLSFPLASSDLGSEVHENEFMMNNLHLFLIQRRMEEMASVGLDTTSLDDDAFNLEAAQDKCILRLIASCCNSNKLERATELVKLLTLEKSMRGAIKLVTALKLPNLAERFSSILEERLLEEAKKATETNIKENCVAPIKADALHNASKASTRTESLNAVTMSSPKLSSPSFIKKDKTQEGSKAGIIRSPMVNETMKGKQTGEETSDKVGKVGDMTPHPSKKNGLDKSETGLGQPNRPSNPFLKSTIK 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00801 946 MobiDBLite consensus disorder prediction 389 404 - -
Viun9g00801 946 MobiDBLite consensus disorder prediction 849 946 - -
Viun9g00801 946 Pfam Minichromosome loss protein, Mcl1, middle region 424 705 IPR022100 -
Viun9g00801 946 SUPERFAMILY WD40 repeat-like 19 307 IPR036322 GO:0005515
Viun9g00801 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Viun9g00801 946 Pfam WD domain, G-beta repeat 230 266 IPR001680 GO:0005515
Viun9g00801 946 Pfam WD domain, G-beta repeat 138 173 IPR001680 GO:0005515
Viun9g00801 946 Pfam WD domain, G-beta repeat 56 89 IPR001680 GO:0005515
Viun9g00801 946 Gene3D - 97 347 IPR015943 GO:0005515
Viun9g00801 946 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Viun9g00801 946 Gene3D - 3 96 IPR015943 GO:0005515
Viun9g00801 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Viun9g00801 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Viun9g00801 946 MobiDBLite consensus disorder prediction 925 946 - -
Viun9g00801 946 CDD WD40 22 310 - -
Viun9g00801 946 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Viun9g00801 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Viun9g00801 946 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 921 - -
Viun9g00801 946 MobiDBLite consensus disorder prediction 898 923 - -
Viun9g00801 946 MobiDBLite consensus disorder prediction 389 410 - -
Viun9g00801 946 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Viun9g00801 946 MobiDBLite consensus disorder prediction 355 370 - -
Viun9g00801 946 MobiDBLite consensus disorder prediction 849 873 - -
Viun9g00801 946 MobiDBLite consensus disorder prediction 340 370 - -
Viun9g00801 946 SMART WD40_4 177 223 IPR001680 GO:0005515
Viun9g00801 946 SMART WD40_4 135 174 IPR001680 GO:0005515
Viun9g00801 946 SMART WD40_4 226 266 IPR001680 GO:0005515
Viun9g00801 946 SMART WD40_4 268 307 IPR001680 GO:0005515
Viun9g00801 946 SMART WD40_4 51 90 IPR001680 GO:0005515
Viun9g00801 946 SMART WD40_4 93 132 IPR001680 GO:0005515
Viun9g00801 946 SMART WD40_4 2 47 IPR001680 GO:0005515
Viun9g00801 946 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00801 58 272 Miscellaneous Gene Families AT5G08390 23.502 2.03e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00801 K11274 - gmx:100818807 1618.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00801 9 5991839 5996548 Viun9g00801 9 5991839 5996548 ECH