Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun9g00632 | ATGGATCACCACGAGGATGAGAGCAACAGCAAACAAGACGATGAGGAAGCTGTTGCTCGCCTTGAGGAAATAAAGAAGTCCGTTGAGGCAAAAATGGCTTTACGTCAAAGCAATTTGAATCCTGAAAGGCCTGATTCAGGATTCTTAAGGACATTGGATTCCAGTATTAAGCGCAACACTGCGGTTATTAAGAAGCTGAAGCAGATCAATGAGGAGCAGCGTGAATCTTTGATGGATGAGTTAAGAAGTGTCAACTTAAGCAAATTTGTCAGTGAAGCCGTGACTGCAATATGTGATGCCAAACTTAGAAGTTCTGATATACAAGCTGCAGTTCAGATTTGTTCTTTGCTTCATCAAAGGTACAAGGACTTTGCACCAAGCCTGATTCAAGGGCTTCTCAAAATCTTCTCTCCTGGAAAGCCTGGCGATGAATCAGATGCTGATAGAAACTTGAAGGCAATGAAGAAGCGCAGCACCCTGAAACTTCTTATGGAACTTTTCTTTGTCGGAGTTATTGAAGATGGTGGCATTTTTATAAATATCATAAAAGATCTTACCAATGGGGAACAGCTGAAAGATCGGGATGCTGCACAAACAAGTTTGACCCTTCTTTCTAGTTTTGCTCGTCAGGGGAGAATTTTTCTTGGACTCTCTGTTAGTGGGCCGGAAATTCATGAAGAGTTTTTTAAAGGCCTTAACATCACAGCTGATCAGAAGAAAGTTTTCCGGAAAGCATGCTATTCCTTTTATGATGCTGCTGCTGAACTACTTCAGTCTGAGCATTCTTCACTTCGATTAATGGAGCATGAAAATTCAAAGATTTTGAATGCAAAAGGAGAACTCAGTGATGAAAATATTGCTTCATATGAAAAGCTTCGTAAATCCTATGATCATTTATACAGAAATGTTTCATCATTAGCAGAAGCACTTGATATGCAGCCTCCTGTTATGCCAGAGGATGGACACACGACTAGGGTTACCAGTGGTGAGGAGGGTATGTCTTCTGCTTCGGGTAAAGATTCTTCTGCTGTTGAACCAATATGGGATGATGAAGATACAAGGACTTTCTATGAATGTTTACCTGATCTTAGAGCGTTTGTTCCTGCTGTGCTTTTGGGAGAAACAGAGCCAAAAAGCAGTGAGCAATCTGCAAAGGGTCAAGACCAACCAACTGAAATAGTACCTGAATCAGACAAAGGTCAACAGACCACCCATGAAAGTGGAGAGATCTCTACAGAGTCTAATGCTTTGCCAGAGGCAGAAAGCACAGAAAGAGTGAAGGATAAGGAAGAAAAAGACAAGTCTAAAGAATCGGACAGAGAGAAGGAAAAAGAAAAAGATAATGATAAAAAGGGGGAAAATGAAAAGGACAAACTCAGAAGTCTTGAAGGGACAAATTTGGATGCTCTACTGCAGAGGCTTCCTGGCTGTGTGAGCCGGGACCTTATAGATCAATTAACTGTTGAGTTCTGTTATCTGAATTCAAAATCAAATCGAAAAAAGCTTGTGAGGGCTTTGTTCAATGTTCCAAGGACATCTCTAGAACTGCTAGCATATTATTCACGCATGGTTGCCACACTCTCAACTTGTATGAAGGATGTCTCCTCCATTCTGTTACAAATGCTGGAGGAGGAATTCAATTTCTTAATAAATAAAAAGGATCAGATGAACATTGAGACAAAGATAAGGAACATCAGGTTCATTGGAGAACTTTGCAAGTTCAAAATTGCTTCTCCTGGCCTAGTCTTTAGTTGTTTGAAGGCCTGTTTAGATGATTTTACACATCACAACATTGATGTAGCTTGCAATCTTCTTGAAACATGTGGCCGTTTTCTGTATCGGTCTCCAGAAACTAGTATACGAATGGCTAACATGTTGGAGATACTGATGCGCTTGAAAAATGTAAAAAATTTGGATCCGAGACATAGCACTTTAGTGGAGAATGCATACTACCTTTGCAAACCACCAGAAAGATCTGCACGAGTAGCTAAAGTTCGTCCTCCATTGCATCAGTATATCAGAAAATTACTTTTCTCTGATCTTGACAAGTCTACCATTGAGCATGTGCTAAGGCAACTGCGCAAATTACCATGGAATGAATGTGAAACCTATCTTTTGAAGTGCTTCATGAAGGTCTACAAAGGAAAGTATGGTCAGATCCACCTCATTGCATCTCTTGCTGCTGGATTAAGTCGCTATCATGATGAGTTTGCTGTAGCTATTGTTGATGAGGTTCTTGAGGAGATTAGAGTTGGGCTGGAGTTAAATGACTATGGTATGCAGCAAAGACGCATTGCTTACATGCGATTCTTAGGGGAGCTTTACAACTATGAGCATGTGGACTCTTCTGTTATTTTTGAGACGCTATATCTCATTCTCGTCTATGGTCATGGGACATCAGAGCAAGATGTACTTGATCCACCTGAAGATTGTTTTCGCATAAGGTTGATCATTACTCTACTTGAAACTTGTGGGCATTACTTTGATCGTGGCTCTTCTAAGAGGAAACTTGATCGGTTCCTAATACACTTCCAGAGGTATATTTTAAGCAAAGGGGCACTACCTCTGGACATTGAATTTGACTTACAGGATCTGTTTGCCGACTTACGACCCAATATGGTTCGTTACACTTCTATTGAGGAAGTGAATACAGCTCTAGTAGAACTGGAGGAACATGATCGGATAGTTTCTGCTGATAAGGCTAGTGGTGAAAAACATTCTGACAATGAAAAGCCTTCGAGTAGGACCATTTCCACTATTACTGTGGTTGGCAATGGACAGAGCATTGATAATGGCACGGAGGAAAATGGAGTGCAAGATGATGTTAATGACAGTGAGACTGATTCAGGGAGTGACACAATTGATGTAGAGGGTCATGATGATGAAGAGTTGGATGAGGAGAATCATGATGATGGCTGTGAAACTGAGGATGATGACGATGACGATGACGATGGACCTGGACCTGCCTCCGATGAAGAGGATGAAGTGCACGTGAGACAAAAGGTGACGGAGGTGGATCCTCTAGAAGAAGCTGATTTTGATCAGGAGCTCAAGGCTGTAGTGCAGGAGAGTATGGAACAGAGAAGGCAGGAACTAAGGGGTCGTCCTACATTGAACATGATGATTCCAATGAATGTCTTTGAGGGATCTACAAAGGATCACCACGGGAGGGGAGTTAGTGGGGAAAGTGGTGATGAGGCACTAGATGAGGATACTGGTGGAAACAAAGAGGTTCAGGTGAGAGTTCTAGTGAAGCGAGGAAACAAGCAGCAAACAAAACAGATGTTCATCCCACGGAATTCCTCACTAGTGCAGAGTACAAAACAGAAAGAAGCAGCCGAGCTTCAAGAGAAAGAAGACATCAAGAGACTTGTTTTGGAGTATAATGACAGAGAAGAGGAGGAGCTTAATGGATTAGGAACCCAGCCAGCAAACTGGATGCAGAGTGTAGGTAACAAGACTGGTGGCCGTGGTAGCACTTTGGAAGGAAACAGTGGCAGGGGTAGTGGATCAAGACATCGACATCATAACTATTCTGGCAGTGGAACATATTATAGCAGAAGAAAGTGA | 3570 | 0.419 | MDHHEDESNSKQDDEEAVARLEEIKKSVEAKMALRQSNLNPERPDSGFLRTLDSSIKRNTAVIKKLKQINEEQRESLMDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKIFSPGKPGDESDADRNLKAMKKRSTLKLLMELFFVGVIEDGGIFINIIKDLTNGEQLKDRDAAQTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVFRKACYSFYDAAAELLQSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVSSLAEALDMQPPVMPEDGHTTRVTSGEEGMSSASGKDSSAVEPIWDDEDTRTFYECLPDLRAFVPAVLLGETEPKSSEQSAKGQDQPTEIVPESDKGQQTTHESGEISTESNALPEAESTERVKDKEEKDKSKESDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKLVRALFNVPRTSLELLAYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMNIETKIRNIRFIGELCKFKIASPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETSIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLLFSDLDKSTIEHVLRQLRKLPWNECETYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEFAVAIVDEVLEEIRVGLELNDYGMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILVYGHGTSEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLDIEFDLQDLFADLRPNMVRYTSIEEVNTALVELEEHDRIVSADKASGEKHSDNEKPSSRTISTITVVGNGQSIDNGTEENGVQDDVNDSETDSGSDTIDVEGHDDEELDEENHDDGCETEDDDDDDDDGPGPASDEEDEVHVRQKVTEVDPLEEADFDQELKAVVQESMEQRRQELRGRPTLNMMIPMNVFEGSTKDHHGRGVSGESGDEALDEDTGGNKEVQVRVLVKRGNKQQTKQMFIPRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPANWMQSVGNKTGGRGSTLEGNSGRGSGSRHRHHNYSGSGTYYSRRK | 1189 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun9g00632 | 1189 | Gene3D | - | 669 | 896 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 375 | 460 | - | - | |
| Viun9g00632 | 1189 | FunFam | Regulator of nonsense transcripts UPF2 | 8 | 318 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 1175 | 1189 | - | - | |
| Viun9g00632 | 1189 | SUPERFAMILY | ARM repeat | 465 | 659 | IPR016024 | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 1133 | 1189 | - | - | |
| Viun9g00632 | 1189 | Pfam | MIF4G domain | 471 | 655 | IPR003890 | GO:0003723|GO:0005515 | |
| Viun9g00632 | 1189 | Pfam | MIF4G domain | 673 | 867 | IPR003890 | GO:0003723|GO:0005515 | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 310 | 344 | - | - | |
| Viun9g00632 | 1189 | SUPERFAMILY | ARM repeat | 64 | 183 | IPR016024 | - | |
| Viun9g00632 | 1189 | PANTHER | NONSENSE-MEDIATED MRNA DECAY PROTEIN 2 UP-FRAMESHIFT SUPPRESSOR 2 | 13 | 1137 | IPR039762 | GO:0000184 | |
| Viun9g00632 | 1189 | Coils | Coil | 539 | 559 | - | - | |
| Viun9g00632 | 1189 | Gene3D | - | 427 | 668 | - | - | |
| Viun9g00632 | 1189 | SUPERFAMILY | ARM repeat | 666 | 891 | IPR016024 | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 897 | 912 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 327 | 341 | - | - | |
| Viun9g00632 | 1189 | Gene3D | - | 8 | 318 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 913 | 936 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 991 | 1013 | - | - | |
| Viun9g00632 | 1189 | FunFam | Regulator of nonsense transcripts UPF2 | 667 | 897 | - | - | |
| Viun9g00632 | 1189 | Pfam | Up-frameshift suppressor 2 | 991 | 1127 | IPR007193 | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 937 | 990 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 1141 | 1167 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 420 | 460 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 376 | 419 | - | - | |
| Viun9g00632 | 1189 | Coils | Coil | 11 | 31 | - | - | |
| Viun9g00632 | 1189 | FunFam | Regulator of nonsense transcripts UPF2 | 426 | 664 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 897 | 1013 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 1048 | 1078 | - | - | |
| Viun9g00632 | 1189 | MobiDBLite | consensus disorder prediction | 1050 | 1076 | - | - | |
| Viun9g00632 | 1189 | SMART | if4_15 | 468 | 656 | IPR003890 | GO:0003723|GO:0005515 | |
| Viun9g00632 | 1189 | SMART | if4_15 | 56 | 278 | IPR003890 | GO:0003723|GO:0005515 | |
| Viun9g00632 | 1189 | SMART | if4_15 | 671 | 872 | IPR003890 | GO:0003723|GO:0005515 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun9g00632 | K14327 | - | gmx:100786092 | 2147.09 |