Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00474 ATGAAGATAGTTCTGAGCATCATCTTCTTGAGTTTATTCTCTCTCTCCCACGCTTCTGTGGTAGATTTCTGCGTGGCAGATTTCACAGCTCCCAATGGCCCTGCAGGCTACTCATGCAAGAACCCTGCACACGTGACAGCGAATGACTTTGCCTACTCTGGCCTCGCCACTGCTGGCAACACCTCAAACATCATCAAAGCTGCAGTGACTCCAGCATTTGATGCTCAGTTCCCCGGCGTCAATGGCCTCGGCATTTCTGCCGCACGTTTGGACTTGGCACCAGATGGGGTTATCCCACTCCACACACACCCTGGAGCCTCAGAACTGTTGGTGGTTGTGGAAGGTCAAATCTGTGCTGGATTCGTTGATTCCGGCAACAATGTCTACCTCAAAACCCTCGAAAAGGGTGACATCATGGTTTTCCCTCAGGGCTTGCTGCACTTCCAAATCAACTCTGGTAACTCCCAGGCTTTAGCTTTTGTGAGCTTCAGCAGTGCCAACCCTGGCCTCCAGATTCTCGACTTCGCTTTGTTCAAGAGTGACTTCCCCACTGAACTCATCACCCAGACCACTTTCATTGATGCTGCTGTCGTCAAGAAGCTCAAGGCTGTTCTTGGAGGCTCAGGTTAA 630 0.5111 MKIVLSIIFLSLFSLSHASVVDFCVADFTAPNGPAGYSCKNPAHVTANDFAYSGLATAGNTSNIIKAAVTPAFDAQFPGVNGLGISAARLDLAPDGVIPLHTHPGASELLVVVEGQICAGFVDSGNNVYLKTLEKGDIMVFPQGLLHFQINSGNSQALAFVSFSSANPGLQILDFALFKSDFPTELITQTTFIDAAVVKKLKAVLGGSG 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00474 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
Viun9g00474 209 Gene3D Jelly Rolls 17 208 IPR014710 -
Viun9g00474 209 CDD cupin_OxOx 16 205 IPR001929 GO:0030145
Viun9g00474 209 SMART Cupin_1_3 53 199 IPR006045 -
Viun9g00474 209 Pfam Cupin 54 197 IPR006045 -
Viun9g00474 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Viun9g00474 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Viun9g00474 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Viun9g00474 209 FunFam Auxin-binding protein ABP19a 17 208 - -
Viun9g00474 209 SUPERFAMILY RmlC-like cupins 20 203 IPR011051 -
Viun9g00474 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 16 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00474 Viun-Chr9 3379733 3380733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00474 1 208 Miscellaneous Gene Families AT5G20630 68.095 2.97e-99 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00474 - - gmx:100806553 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g05441 3 60376841 60377799 Viun9g00474 9 3379733 3380733 PCT