Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00403 ATGGAGACTCCTCCTCAGCAAGGTGTGGTGAAGAAGAAGGAGACAAGGGGTCGAAAACCTAAGCCAAAGGACGACAAGAAAGATGAACACTCCAAGACAAAGGAAGGGAGAAAGACACAACAATATCAGCAACAACAGCAGCAGCAACAACCTTCGGTGGATGAGAAATACACGCAATGGAAGTCCCTTGTCCCTGTCCTCTATGACTGGCTTGCTAACCATAATCTCGTTTGGCCCTCTCTCTCTTGCCGGTGGGGTCCTCAGCTCGAACAAGCCACTTATAAGAATCGTCAGCGGCTCTATCTTTCGGAGCAGACTGATGGCAGTGTGCCAAATACTCTGGTAATAGCGAATTGCGAGGTTGTGAAGCCTAGGGTTGCGGCTGCAGAGCACATTTCACAGTTTAATGAAGAGGCACGGTCCCCCTTTGTGAAGAAGTTCAAGACCATCATACATCCTGGCGAGGTGAACAGAATTAGGGAATTACCACAAAATTCCAAGATAGTGGCAACACATACAGATAGCCCTGATGTCCTTGTTTGGGATGTTGAGAATCAACCTAACCGTCATGCTGTCCTTGGAGCTACAAACTCTCGGCCTGATTTGATATTGACTGGACACCAAGACAATGCAGAATTTGCTCTTGCTATGTGCCCAACTGAGCCCTATGTTCTTTCAGGAGGAAAGGACAAAACGGTGGTATTGTGGAGTATTGAGGACCATATAACATCTGCTGCCACAGGTGGATCAATTATCAAGCCAAACTCTAAATCTGGGGAAACCAATGATAAAACTGCTGAAAGCCCTTCTGTCGGGCCACGAGGTATCTACTGTGGCCATGAGGATACTGTTGAAGATGTGACTTTCTGTCCATCTAGTGCACAGGAGTTCTGTAGTGTTGGAGATGATTCTTGTCTCATCTTATGGGATGCACGTGTTGGGTCTAGCCCTGTGGTTAAGGTTGAAAAAGCTCATAATGCTGATCTTCACTGTGTTGATTGGAATCCACATGATGATAATCTGATTCTTACTGGGTCAGCAGATAATTCTGTTCGCATGTTTGATCGTCGCAATCTCACCACTAACGGAGTTGGGTCGCCCATCCATAAATTTGAGGGTCACAAAGCTGCTGTTCTTTGTGTTCAGTGGTCTCCAGACAAATCATCTGTATTTGGTAGTTCAGCTGAGGATGGTCTCTTGAACATTTGGGACTATGAGAAGGTTGGTAAAAAGATAGAGCGATCTGGAAAATCAATAAGTGCTCCTCCAGGGTTGTTTTTCCAACATGCTGGTCATAGAGATAAAGTAGTCGATTTTCATTGGAATGCATATGATCCTTGGACAATTGTTAGCGTCTCTGATGACTGTGAAAGTACTGGTGGAGGGGGCACATTGCAGATATGGCGCATGAGTGATTTGATCTACAGACCAGAAGAAGAGGTTTTAGCAGAGCTGGAGAAATTCAAATCTCATGTGGTGGCATGCGCTTCCAAGTCTGAAAAATGA 1506 0.4548 METPPQQGVVKKKETRGRKPKPKDDKKDEHSKTKEGRKTQQYQQQQQQQQPSVDEKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEHISQFNEEARSPFVKKFKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLVWDVENQPNRHAVLGATNSRPDLILTGHQDNAEFALAMCPTEPYVLSGGKDKTVVLWSIEDHITSAATGGSIIKPNSKSGETNDKTAESPSVGPRGIYCGHEDTVEDVTFCPSSAQEFCSVGDDSCLILWDARVGSSPVVKVEKAHNADLHCVDWNPHDDNLILTGSADNSVRMFDRRNLTTNGVGSPIHKFEGHKAAVLCVQWSPDKSSVFGSSAEDGLLNIWDYEKVGKKIERSGKSISAPPGLFFQHAGHRDKVVDFHWNAYDPWTIVSVSDDCESTGGGGTLQIWRMSDLIYRPEEEVLAELEKFKSHVVACASKSEK 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00403 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 319 IPR001680 GO:0005515
Viun9g00403 501 Pfam WD domain, G-beta repeat 202 237 IPR001680 GO:0005515
Viun9g00403 501 Pfam WD domain, G-beta repeat 365 404 IPR001680 GO:0005515
Viun9g00403 501 Pfam WD domain, G-beta repeat 323 355 IPR001680 GO:0005515
Viun9g00403 501 Pfam WD domain, G-beta repeat 275 310 IPR001680 GO:0005515
Viun9g00403 501 MobiDBLite consensus disorder prediction 7 37 - -
Viun9g00403 501 MobiDBLite consensus disorder prediction 1 54 - -
Viun9g00403 501 MobiDBLite consensus disorder prediction 248 268 - -
Viun9g00403 501 SMART WD40_4 270 310 IPR001680 GO:0005515
Viun9g00403 501 SMART WD40_4 143 182 IPR001680 GO:0005515
Viun9g00403 501 SMART WD40_4 422 469 IPR001680 GO:0005515
Viun9g00403 501 SMART WD40_4 315 355 IPR001680 GO:0005515
Viun9g00403 501 SMART WD40_4 364 404 IPR001680 GO:0005515
Viun9g00403 501 SMART WD40_4 197 237 IPR001680 GO:0005515
Viun9g00403 501 MobiDBLite consensus disorder prediction 38 54 - -
Viun9g00403 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 322 355 IPR001680 GO:0005515
Viun9g00403 501 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 406 IPR001680 GO:0005515
Viun9g00403 501 SUPERFAMILY WD40 repeat-like 142 495 IPR036322 GO:0005515
Viun9g00403 501 PANTHER WD40 REPEAT FAMILY 45 484 - -
Viun9g00403 501 MobiDBLite consensus disorder prediction 248 274 - -
Viun9g00403 501 Gene3D - 29 487 IPR015943 GO:0005515
Viun9g00403 501 Pfam Histone-binding protein RBBP4 or subunit C of CAF1 complex 55 121 IPR022052 -
Viun9g00403 501 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 406 - -
Viun9g00403 501 FunFam WD-40 repeat-containing protein MSI4 29 487 - -
Viun9g00403 501 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 322 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00403 Viun-Chr9 2860177 2866721 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00403 224 464 Miscellaneous Gene Families AT5G08390 24.597 2.98e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00403 K10752 - gmx:100779302 950.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00403 9 2860177 2866721 Viun9g00403 9 2860177 2866721 ECH