Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00223 ATGGCACCGGCGCGAGAGCTTCCGGGGTTTTACTATGATCCTGAGAAGAACAGATATTTCCCCATCAAAGGCCCCATTCCTGGCTCTTCTTCTAAGCCCAAGAACCCTACTCCCAATGCACCCCAAACCCCTTCCAATCAGTTAAAGCAGAGTGGTAGGAGTTGTTGTAGGAAGCTCAGAAACAGGACCTTGTCGAAGCTGCTTCAGGCTAGAGAGTTGGATGGTCGCCATGTCATTTACTCTCATTATTGCAAATGTAACTTTGCCGAGGAATACGGGAAAATTCAAGCATCTAAACCTGTGGTCTGGAGATACCGGGGAACAGATAAGATCGGTGTTTGTGCTTTGGAACACTTGCGCGTTGATGTGCAGACGTTGCAGGGGCAAACTGAAACTGATGTTTTATTGACGGGCAGCATAAATGGCTCCTTGAGTTTTTCTGAAGTTGGAGGGGTTGGACAATATTTTGATGACGGGACAAAATGGATGGCAGATTGTTTGAGGAATTATGTTAAAGGGAAAACATTTGAGCATGATGAAGTGCATAAGCCAGTTTTCAGACCTAATCGAGCTGCATTGCTTATGCCCTCCAGAATATCTTGTATAAGGTTGGGTCCAAAGTGCTCTCCTCAGGCAGAGAATGATGGTTCTCTTGCAGGACGTGTTTTATTTACTACACTGGGATCAGAAACGTCAGGTGGATCGGTTTATACTCTTGGTCTTCTTGAACCATTAAATCTTGGACCAGGTATACTGAACACATGGAGCGGACTTGAGGAAATTGCTTCTTTCAGATGTACCCTCTGGACAGCAGAATATGATTATAATAGACACCGGGCTGTAATTGGTACAAATTTAGGAGGTGCTTCAGTGGATCTGGAAACAAGGATGGAAACATGGTTTTTACGTTGTAAAAGTGATGTTTTTGCACAACAAATTATTAATTCTGGAAATGTGATTTTATGCGGGCTTAGAAATGGGGCCATTGTGACTGCAGATTTTCGTGAGAGAAGAGAAAGTCTTTCTGATAGACTTATTACCCATCGAATACCATATAATTCAGATACGAAAGTTGGAAGTTCTAAAAAGGAATGGTTCAAGCTCAAAGGAGACATATATCCTTCCCATACAATTAGGATGCCTTCATCTATATCTTCTTTGGTGTCACTTCAGTTTGATGAGCAGTACTTTGTAGCAAGCTCAATGGATGGATCGATTAGGCTTTATGATCATCGTCTACTTCAGAGGGGTGCCGTTCAATGTTATGAAGGGCACGTGAATTCTCATACTCGTATACAACTTGGTGTCGACCCAGCTGAGAGATTTGTTATGTCAGGGGGAGAGGATTGCAAACTACGGTTATGGAGTCTCAAGTCTGGTGAATTGCTTTTTGAGGACAAGTTCTCTGATTCAATCCTCTCCACAATGTGCTATAAAACATACAGCAGTTGTAAAGCAGAAGAGGAAAACCAATACAAGCGTGACTCCTCTCAGGGTGCATGGCTTGGATCACATGAAGGACTGTTTTATATGCGCTGGTGA 1542 0.4306 MAPARELPGFYYDPEKNRYFPIKGPIPGSSSKPKNPTPNAPQTPSNQLKQSGRSCCRKLRNRTLSKLLQARELDGRHVIYSHYCKCNFAEEYGKIQASKPVVWRYRGTDKIGVCALEHLRVDVQTLQGQTETDVLLTGSINGSLSFSEVGGVGQYFDDGTKWMADCLRNYVKGKTFEHDEVHKPVFRPNRAALLMPSRISCIRLGPKCSPQAENDGSLAGRVLFTTLGSETSGGSVYTLGLLEPLNLGPGILNTWSGLEEIASFRCTLWTAEYDYNRHRAVIGTNLGGASVDLETRMETWFLRCKSDVFAQQIINSGNVILCGLRNGAIVTADFRERRESLSDRLITHRIPYNSDTKVGSSKKEWFKLKGDIYPSHTIRMPSSISSLVSLQFDEQYFVASSMDGSIRLYDHRLLQRGAVQCYEGHVNSHTRIQLGVDPAERFVMSGGEDCKLRLWSLKSGELLFEDKFSDSILSTMCYKTYSSCKAEEENQYKRDSSQGAWLGSHEGLFYMRW 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00223 513 MobiDBLite consensus disorder prediction 1 52 - -
Viun9g00223 513 Pfam WD domain, G-beta repeat 420 456 IPR001680 GO:0005515
Viun9g00223 513 Gene3D - 288 486 IPR015943 GO:0005515
Viun9g00223 513 PANTHER DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED 1 513 - -
Viun9g00223 513 SUPERFAMILY WD40 repeat-like 292 477 IPR036322 GO:0005515
Viun9g00223 513 SMART WD40_4 415 456 IPR001680 GO:0005515
Viun9g00223 513 SMART WD40_4 371 410 IPR001680 GO:0005515
Viun9g00223 513 ProSiteProfiles Trp-Asp (WD) repeats profile. 422 465 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00223 Viun-Chr9 1381024 1388472 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00223 385 481 Miscellaneous Gene Families AT5G08390 27.273 1.91e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00223 K11799 - gmx:100798753 855.899