Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00218 ATGCGTTCTCGATCTCGTTATGGATTTTCGATTGCCCAAAATGCCCTCACGCTGCTTTATTTATTTTGCCTCCTCACCAACCCACCAGCGTCGACGGCTCTTAACTTCACCGCGCTGCTCTCCACCGTGCCGGACCTCTCCCAATTCACGGCGCTCCTCGCCTCCGCCACGCCTATAACGGCGGATCTCTCCGACCGCTCCTCCCTCTCCATCCTCGCCGTCCCCAACGCTTACCTCGCCGCCGACGACCACCTCGCCCGCCACCACCTCTCCCCCGCCGCCCTCGCTGACGTCCTCCGCTACCACGTCCTCCTCCAGTTCCTCTCCTGGTCCGACCTCCGCGCACTCCCCCCCGCCGGGAAACTCGTCACCACGCTCCTCCAAACAACCGGACGCGCCACCGACAACTTCGGCTCCGTGAACCTCACGCGCGACCCCCAATCCGGCCTCGTCTCGATCCGCTCCCCTGCCCCTTATTCCCCCTCAAACGTCACCGTTCTGTCCCTCGTCAAAACCCTACCCTACAATGTCACCATCTTCGCCGTCAATTCCCTCCTCATCCCTTACGGCCTTGACCTCATGGCATCCGAAACCCGCCCCAACATCGTCCTCAACATCACCAAAGCGCTAATCGACGGCCACAACTTCAACGTCGCCGCCTCAATGCTCGCGGCCTCCGGCGTAGTTCAGGAATTTGAGGCTGATGAGGGTGGCGCTGGAATCACTCTTTTCGTACCGGTGGATGATGCCTTTGCTGATCTTCCACCCTCTGTGGCCCTTCAGTCTCTACCTGCAGATAAAAAAGGGGTGGTTCTTAAATTCCATGTCCTCCATTCCTATTACCCTCTTGGCTCGCTTGAATCAGTTGTGAACCCCTTCCAACCCACCCTCGCTACTGAGGCCATGGGTGCTGGTAGTTTCACACTCAACATTTCGCGTGTGAATGGCTCTGTTGCCATCAACACCGGCATTGTGCAGGCCTCAGTTACGCAGACCGTCTTTGATCAGAACCCTGTTGCCATTTTTGGGGTTTCCAAGGTTCTCTTGCCGAGGGAGATTTTTGGCAGGAACCCAATTGTCACTGCCAAGCCTCTTGAAGGTGCTCCTCCGCCGGATGAGGATGCGCTGTCACCAGAGAATTCGCCGGGATTTGGTGGACAGCCCTCCCACCTATCGTCACCGCCGGGGTTTCGCGAAGATGTGCGGTCTCATGGTGGTGGTGGTGGTGGTTCCTTGTCCTTTGCTGTTGTTCTTTGCTGTATAGTATTGTATCTTGTGGTATAG 1284 0.5755 MRSRSRYGFSIAQNALTLLYLFCLLTNPPASTALNFTALLSTVPDLSQFTALLASATPITADLSDRSSLSILAVPNAYLAADDHLARHHLSPAALADVLRYHVLLQFLSWSDLRALPPAGKLVTTLLQTTGRATDNFGSVNLTRDPQSGLVSIRSPAPYSPSNVTVLSLVKTLPYNVTIFAVNSLLIPYGLDLMASETRPNIVLNITKALIDGHNFNVAASMLAASGVVQEFEADEGGAGITLFVPVDDAFADLPPSVALQSLPADKKGVVLKFHVLHSYYPLGSLESVVNPFQPTLATEAMGAGSFTLNISRVNGSVAINTGIVQASVTQTVFDQNPVAIFGVSKVLLPREIFGRNPIVTAKPLEGAPPPDEDALSPENSPGFGGQPSHLSSPPGFREDVRSHGGGGGGSLSFAVVLCCIVLYLVV 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00218 427 SUPERFAMILY FAS1 domain 32 189 IPR036378 -
Viun9g00218 427 Gene3D FAS1 domain 26 188 IPR036378 -
Viun9g00218 427 Pfam Fasciclin domain 215 350 IPR000782 -
Viun9g00218 427 FunFam Fasciclin-like arabinogalactan protein 4 204 351 - -
Viun9g00218 427 ProSiteProfiles FAS1/BIgH3 domain profile. 33 186 IPR000782 -
Viun9g00218 427 Gene3D FAS1 domain 204 351 IPR036378 -
Viun9g00218 427 SUPERFAMILY FAS1 domain 210 350 IPR036378 -
Viun9g00218 427 MobiDBLite consensus disorder prediction 361 404 - -
Viun9g00218 427 FunFam fasciclin-like arabinogalactan protein 4 33 188 - -
Viun9g00218 427 ProSiteProfiles FAS1/BIgH3 domain profile. 203 348 IPR000782 -
Viun9g00218 427 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 15 407 IPR033254 -
Viun9g00218 427 SMART fasc_3 242 351 IPR000782 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00218 Viun-Chr9 1339313 1341122 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00218 - - pvu:PHAVU_009G244800g 764.222