Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00177 ATGCTGGAGCGGTGCCTGGGGATGCGGCGCGTGCGGCAGATTCAGCGCGCGTGCCGGCACAGTACGGTGACTTTCCTCTGCCTCTTCCTCACGGTGGTCGTCCTCCGCGGCACAATCGGGGCTGGCAAGTTCGGTACGCCGGAGCAGGACTTCAACGAGATCCGCCATCACATCTCCGCCGCCCGCGCCCGCCGCGTCCTCGAGGAAACCAAACCCGAAGCCGGTTCCAACGCCGATTCCAACCCTAACAACTACGCCACCTTCGATCTCTCTAAGATCCTCGTGGACGAGCCTCTCGCGGAGGACGAAAAGCCTGACCCAAATGCTCCATACACTCTGGGACCCAAAATCTCCGATTGGGATGAACAGCGCCGAGCCTGGCTCCGAGCCAACCCTGAGTACCCTAACTTCATCCGACCCAACAAGCCACGTGTACTTTTAGTGACCGGTTCGTCCCCCAAACCGTGTGAAAACCCGGTCGGTGATCACTACCTTGTGAAATCGATCAAGAACAAGATTGACTATTGCAGGGTTCATGGGATTGAGATTTTCTACAACATGGCTCTTTTGGACGCTGAGATGGCAGGGTTTTGGGCCAAGCTTCCCTTGATTCGTAAACTTTTACTGTCACACCCTGAAGTGGAGTTTCTCTGGTGGATGGACAGTGATGCAATGTTCACCGACATGGCTTTTGAGGTTCCCTGGGAGAGGTACAAAGATTCAAACTTTGTTATGCACGGGTGGAATGAGATGGTGTATGATGAGAAGAATTGGATTGGGTTGAACACTGGGAGTTTTCTGTTGAGGAATTGTCAATGGTCTTTGGATATTCTTGATGCTTGGGCTCCTATGGGGCCTAAAGGGAAGATAAGGGATGAGGCTGGGAAAGTGCTCACTAGGGAGCTTAAGAATAGGCCTGTTTTTGAAGCTGATGATCAATCTGCAATGGTTTATTTGTTGGCCACTGGGAAGGAAACATGGGGTAACAAGGTTTACCTTGAGAATCATTATTACTTGCACGGGTATTGGGGGATTTTGGTGGACCGTTATGAGGAGATGATTGAGAATTATCACCCGGGACTTGGGGATCATAGGTGGCCTTTGGTGACCCACTTTGTGGGGTGCAAGCCTTGTGGGAAGTTTGGGGATTACCCTGTAGAGAGGTGCTTGAAGCAGATGGATAGGGCTTATAATTTTGGGGATAACCAGATTTTGCAGATGTATGGCTTCACTCATAAGTCCCTTGGTAGTCGTAGGGTGAAGAAAGTGAGGAATGATACCAGCAACCCTCTTGAGATCAAGGATGATCTTGGGTTGCTTCACCCTGATTTCAAAGCTATCAAGCTTCCTTCTTCTTGA 1359 0.5085 MLERCLGMRRVRQIQRACRHSTVTFLCLFLTVVVLRGTIGAGKFGTPEQDFNEIRHHISAARARRVLEETKPEAGSNADSNPNNYATFDLSKILVDEPLAEDEKPDPNAPYTLGPKISDWDEQRRAWLRANPEYPNFIRPNKPRVLLVTGSSPKPCENPVGDHYLVKSIKNKIDYCRVHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDSNFVMHGWNEMVYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKIRDEAGKVLTRELKNRPVFEADDQSAMVYLLATGKETWGNKVYLENHYYLHGYWGILVDRYEEMIENYHPGLGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHKSLGSRRVKKVRNDTSNPLEIKDDLGLLHPDFKAIKLPSS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00177 452 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 141 297 IPR029044 -
Viun9g00177 452 PANTHER XYLOGLUCAN 6-XYLOSYLTRANSFERASE 5-RELATED-RELATED 6 436 IPR008630 GO:0016020|GO:0016757
Viun9g00177 452 Pfam galactosyl transferase GMA12/MNN10 family 142 381 IPR008630 GO:0016020|GO:0016757
Viun9g00177 452 FunFam xyloglucan 6-xylosyltransferase 2 141 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00177 Viun-Chr9 1090008 1091940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun9g00177 1 452 Glycosyltransferase AT3G62720 76.856 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00177 K08238 - gmx:100818287 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00177 9 1090008 1091940 Viun9g00177 9 1090008 1091940 ECH