Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun9g00121 ATGGCCAATGCAGGCCACCCTAGCCGGCAGCCACCACTGCTATATAAAGACTTCCCTTTCCACATTTCATACACCAACACCAACATCACTGTCATGGGTGTATTTACTCAGGTTTATGATACCCCTGCTGCTGTGCCTCCTGCAAGGCTTTTCAAAGCCATGACCTTGGATTTCCATAACCTCTTCCCAAAGCTTGTGGATACCATCCACAGCATTGAATTCACCCAAGGAAATGGTGGTCCTGGCACCATCAAGAAGATCACCACCATTCAAGGTGAAGAAAGCAAGTATGTGCTGCACAGGGTTGATGCAATTGATGAGGGTAGCTTTGTGTACAACTTCAGCATAATTGATGGCAGTGGCTTGCCTGAGACATTGGAGAAGATCTCATTCGAGAGCCAACTGGTAGAAGGCTCCAATGGAGGAACAATTAGGAAGGTGCATGCCACATATTTCACAAAAGGTGAAGCTGTTCTTAGTGAGGAGGAACTGAAGGCTAACCAAGCCAAGATCCAAGGACTTGTGAAGCTTGTTGAAGGCTACCTTCTGGCAAATCCTCATTACTGA 567 0.4674 MANAGHPSRQPPLLYKDFPFHISYTNTNITVMGVFTQVYDTPAAVPPARLFKAMTLDFHNLFPKLVDTIHSIEFTQGNGGPGTIKKITTIQGEESKYVLHRVDAIDEGSFVYNFSIIDGSGLPETLEKISFESQLVEGSNGGTIRKVHATYFTKGEAVLSEEELKANQAKIQGLVKLVEGYLLANPHY 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun9g00121 188 CDD Bet_v1-like 33 182 - -
Viun9g00121 188 PANTHER - 32 186 - -
Viun9g00121 188 FunFam Major pollen allergen Bet v 1-A 32 188 - -
Viun9g00121 188 PRINTS Major pollen allergen Bet V1 signature 96 115 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Viun9g00121 188 PRINTS Major pollen allergen Bet V1 signature 80 89 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Viun9g00121 188 PRINTS Major pollen allergen Bet V1 signature 34 54 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Viun9g00121 188 PRINTS Major pollen allergen Bet V1 signature 140 156 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Viun9g00121 188 PRINTS Major pollen allergen Bet V1 signature 115 128 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Viun9g00121 188 PRINTS Major pollen allergen Bet V1 signature 174 184 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Viun9g00121 188 PRINTS Major pollen allergen Bet V1 signature 57 67 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Viun9g00121 188 Pfam Pathogenesis-related protein Bet v 1 family 32 185 IPR000916 GO:0006952
Viun9g00121 188 Gene3D - 33 188 IPR023393 -
Viun9g00121 188 SUPERFAMILY Bet v1-like 33 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun9g00121 Viun-Chr9 735482 736661 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun9g00121 - - pvu:PHAVU_009G252800g 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun9g00121 9 735482 736661 Viun9g00121 9 735482 736661 ECH
Viun9g00121 9 735482 736661 Viun3g05690 3 62492194 62493027 PCT