Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02985 ATGGCGCAGGTGCTGTATATGGCTTTACCTGTCCCCGCAAAACCCCGCAAAGCTGCATTATCATCTTCTTCTTCCAAGCCATTGAAGTTTCCCCGTAGAAGCCGCAGCACCAACATATCCATTCCCACCACTTCCAAAGGCAGTGGCAAACGTTTGCTCAAACCCCAGAAGCTGAATTTAGAGGTTTCTCCTCATAGAGCTGTTTCAGCGGTGAGGTTGATGCGAATTGAGCTCGGTGGTGCTTTTGCTGACCTTCTCAACGAGAAAGGGAAAGGTTCTGGTGAAAACGAGATGGGGTATGTTCAAAGAACGCTCGGTTTTCGCACTCGGGAGTTGAGTCATCACGACCTTAGATTGGTCACAGACATTGTTGGTGGCACAATTCGCTGGAGAAGATATCTTGATCATCTGATCAATTCACTATGTCATGATAAAGATATATCTAGCATGGAACCTCTTCTCTTACAGATTCTACGAATTGGCTTCTATGAGGTTGTCAAATTGGACATGCCACCTTATGCTGTTGTAGATGAGAACGTGGAGCTTGCTAAAGTTGCTCTCAGACCTGGGGCTGGCAACATGGTCAACGGAATCCTCCGAAAGCTAGTTGTGCTTAAGGAGAACGGTACTCTTCCTTTGCCCAAAGTGGAGGGTGATGACCGTGCTCAAGCACGTGCGTTGGCAACTCTGCACTCACATCCAGTTTGGATGGTAAGGAGATGGACAAAGTATCTCGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAGCCCAGTTTCAGCTTAAGAGCAAATCGTGCAAGTGGTTTTTCAAGAGATGACCTTGTAGCACAGCTTAATGAATTGAAGGTCCCACACAAGCTTTCATTGTATTTAGATGAATTTGTTCGTATCAAAACTGGGTTGCAGATTGTCATTCATGCTGGTCTGCTCAAAAAGGGTTTATGTTCAGTTCAGGACGAAAGTGCAGGTCTAGTAATTTCTGTTGTGGATCCTCAACCTGGTGAAACTATCGTCGATGGCTGTGCTGCTCCTGGTGGGAAGACCCTCTACATGGCCTCTCATTTAAGTGGCCAAGGCAAGGTATTTGCAGTTGATGTAAATAGTGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCACCAAGTGGATGGTGTCATTACCGCCATTCATGCTGATCTTCGCACATTGACTGATAATGGACAACTTAAGAGTGACAAAGTTTTGTTGGACGCTCCATGTTCTGGACTTGGTGTTCTATCCAAGAGAGCGGACTTGCGCTGGAACAGGAAGCTTGAGGATATGGAAGAACTGAAGAAATTACAAGATGAGCTCCTGGATGCAGCATCCAAATTGGTAAAACCTGGGGGAGTATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAACGATGACAGGGTGGCTGCATTTCTTGTAAGACATCCGGATTTCCGCATTGATCATGTAGACAGATTTGTTCCTCCTGATTTTGTGACAAGCAGTGGTTTCTTTTTCTCTAACCCCGTTAAACATTCACTAGATGGTTCCTTTGCTGCTCGTTTAGTACGTGATCCATAG 1593 0.4526 MAQVLYMALPVPAKPRKAALSSSSSKPLKFPRRSRSTNISIPTTSKGSGKRLLKPQKLNLEVSPHRAVSAVRLMRIELGGAFADLLNEKGKGSGENEMGYVQRTLGFRTRELSHHDLRLVTDIVGGTIRWRRYLDHLINSLCHDKDISSMEPLLLQILRIGFYEVVKLDMPPYAVVDENVELAKVALRPGAGNMVNGILRKLVVLKENGTLPLPKVEGDDRAQARALATLHSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRANRASGFSRDDLVAQLNELKVPHKLSLYLDEFVRIKTGLQIVIHAGLLKKGLCSVQDESAGLVISVVDPQPGETIVDGCAAPGGKTLYMASHLSGQGKVFAVDVNSGRLRILKETAKLHQVDGVITAIHADLRTLTDNGQLKSDKVLLDAPCSGLGVLSKRADLRWNRKLEDMEELKKLQDELLDAASKLVKPGGVLVYSTCSIDPEENDDRVAAFLVRHPDFRIDHVDRFVPPDFVTSSGFFFSNPVKHSLDGSFAARLVRDP 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02985 530 Pfam NusB family 97 203 IPR006027 GO:0003723|GO:0006355
Viun8g02985 530 PRINTS RNA (C5-cytosine) methyltransferase signature 410 422 IPR023267 GO:0001510
Viun8g02985 530 PRINTS RNA (C5-cytosine) methyltransferase signature 511 528 IPR023267 GO:0001510
Viun8g02985 530 PRINTS RNA (C5-cytosine) methyltransferase signature 460 476 IPR023267 GO:0001510
Viun8g02985 530 PRINTS RNA (C5-cytosine) methyltransferase signature 313 327 IPR023267 GO:0001510
Viun8g02985 530 PRINTS RNA (C5-cytosine) methyltransferase signature 342 352 IPR023267 GO:0001510
Viun8g02985 530 PRINTS Viridiplantae FMU-related RCMT signature 71 94 IPR023268 -
Viun8g02985 530 PRINTS Viridiplantae FMU-related RCMT signature 210 223 IPR023268 -
Viun8g02985 530 PRINTS Viridiplantae FMU-related RCMT signature 487 499 IPR023268 -
Viun8g02985 530 PRINTS Viridiplantae FMU-related RCMT signature 95 111 IPR023268 -
Viun8g02985 530 Gene3D Vaccinia Virus protein VP39 328 530 IPR029063 -
Viun8g02985 530 NCBIfam 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 107 527 IPR004573 GO:0006364|GO:0008649
Viun8g02985 530 Gene3D - 82 212 IPR035926 -
Viun8g02985 530 SUPERFAMILY NusB-like 102 237 IPR035926 -
Viun8g02985 530 FunFam Ribosomal RNA small subunit methyltransferase B 63 212 - -
Viun8g02985 530 FunFam Ribosomal RNA small subunit methyltransferase B 325 529 - -
Viun8g02985 530 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 188 528 IPR023267 GO:0001510
Viun8g02985 530 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 225 528 IPR029063 -
Viun8g02985 530 CDD AdoMet_MTases 340 466 - -
Viun8g02985 530 MobiDBLite consensus disorder prediction 16 50 - -
Viun8g02985 530 MobiDBLite consensus disorder prediction 18 50 - -
Viun8g02985 530 Gene3D Sun protein; domain 3 221 326 - -
Viun8g02985 530 FunFam 16S rRNA (Cytosine(967)-C(5))-methyltransferase RsmB 220 324 - -
Viun8g02985 530 Pfam 16S rRNA methyltransferase RsmB/F 332 526 IPR001678 GO:0008168
Viun8g02985 530 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 253 529 IPR001678 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02985 Viun-Chr8 37243402 37250533 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02985 K03500 - gmx:100779327 922.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02985 8 37243402 37250533 Viun8g02985 8 37243402 37250533 ECH