Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02945 ATGGCACTTGAATCTTGGGTTCTGAGTTTCCAAAGCTTCAACCCCAGTTCCAGATTGTTTTACACTGCTCATGAAAATCGGCGAAAGAGCATACCAATCAACTTTTTGGGTAGAAACAGTAGATATTCATTTCCCTTTGTTTCCAGTTGTGTCGGTCCATCCACTTTTTCAACCCTGCAGGTTTCAAGTTTTGGAGCAGATGCCAAGTTACTAGGTAGAACTCGGTTGAGGTGTTTAGATGGTAGCAGTGAGGGTTTGAGTGAGAGAAATGCTGTTTCCGAAACCAATTTGAAGTTTATGCACGAATTGTTGAAGAGGGGAATCATCCTAGCTGCAACTGTTTGTGGGGTTTTGGTGTTTGGATGTCCACGAGTTTTCGCAGTTGAAGGTGTTGTGGATGCAGGATATGGCGTTATTGGACAGAGCATACTTTTGCTTAGAAATACTTGGCCTAAAGTGTTGCAAGTTCTTCGCATATTCAAGGAGCAAGGTTTAGTGCTGGCACTGCTTTTGGGCATTTCGGCCTTTTTCTCTATGGCAGAGACTTCAATCACCACACTTTGGCCTTGGAAGGTTCGTGAGTTGGCTGAAAAGGAGTCCGAAAATGGCGTTTTCAGACTACTCCGAAGTGATGTTACTCGGTTCCTTACAACAATACTTATTGGCACAACGGTGGTCAATATCGGTGCAACTGCACTGGTCACTGAAGCAGCAACTGCTATGTTTGGTGAAGCTGGTGTCAGTGCTGCAACAGGAGTGATGACTGTTGCCATTTTGCTTCTCACTGAAATCACTCCAAAAAGTATAGCTGTTCATAATGCCACAGAGGTGGCTCGTTTTGTGGTCAGGCCAGTGGCATGGCTTTCCCTGGTGTTGTATCCTGTAGGAAGAATTGTTACTTATCTTTCAATGGGGATGCTGAAATTGCTTGGCCTAAAAGGAAGAAGTGAGCCATATGTGACAGAAGATGAGCTAAAATTGATGCTAAGAGGTGCAGAACTAAGTGGGGCAATAGAGGAGGAAGAACAGGATATGATTGAAAATGTTCTAGAGATAAAAGATACACATGTCAGAGAGGTTATGACCCCTCTTGTTGATGTTGTTGCAATTGATGCAAGTTCAAGCCTGGTAGACTTTCATCACTTGTGGGTCACACATCAGTACTCAAGGGTACCTGTTTTTGAGCAACGCGTTGATAATATAATGGGTATAGCGTATGCAATGGATCTGCTGGACTATGTTCAAAAGGGGGAGTTGCTGGAAAGTACTACAGTTGGAGATATGGCTCACAAGCCTGCTTATTTTGTACCTGATTCAATGTCTGTTTGGAATCTTCTTAGAGAGTTCAGAATCAGGAAGGTTCACATGGCGGTTGTTCTTAATGAGTATGGTGGAACTGTGGGGATTGTAACTCTAGAAGATGTTGTGGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGACTCAAAGGAGGAGATACAGAAAAAAACTGGTTACATAGTAATGCGAGCTGAGGGTGTTTTTGATGTGGATGCAAACACATCTATTGATCAGCTCTCAGAAGATTTGAACATCAAGATGCCGGAGGGTCATCAATATGAGACAGTATCAGGCTTTGTGTGTGAGGCATTTGGATACATTCCAAGGACAGGTGAGTGCATCAAAGTGGTTCTTGAAAGGGAAGATGAAGATGATAACAATGAGTCCAGTGCTGACCAGCAGGATCAGAAGGAAAAGAATCAAACTTTCAAACTTGAGATACTAGCTGGAAATGCTAGAAAGGTGAGCGCAGTTCGGTTTGAAAGAAAAAATAATAATGATGAGATGTTGGAGACTAAAGTCACTCGCATGGTCCCCAAAATCATGAAGAGAAAATGGAACAACGCTGAAAACTTGGAGGCTGATGATACAGAATATGATGGAGATACATTTGCAAAGAAACCACAGGAAGACATTTCTAGTGAATATTTAGTTGATCAGGAAAGTTCTAGTACAGAATAA 2001 0.4223 MALESWVLSFQSFNPSSRLFYTAHENRRKSIPINFLGRNSRYSFPFVSSCVGPSTFSTLQVSSFGADAKLLGRTRLRCLDGSSEGLSERNAVSETNLKFMHELLKRGIILAATVCGVLVFGCPRVFAVEGVVDAGYGVIGQSILLLRNTWPKVLQVLRIFKEQGLVLALLLGISAFFSMAETSITTLWPWKVRELAEKESENGVFRLLRSDVTRFLTTILIGTTVVNIGATALVTEAATAMFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVARFVVRPVAWLSLVLYPVGRIVTYLSMGMLKLLGLKGRSEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVVAIDASSSLVDFHHLWVTHQYSRVPVFEQRVDNIMGIAYAMDLLDYVQKGELLESTTVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIQKKTGYIVMRAEGVFDVDANTSIDQLSEDLNIKMPEGHQYETVSGFVCEAFGYIPRTGECIKVVLEREDEDDNNESSADQQDQKEKNQTFKLEILAGNARKVSAVRFERKNNNDEMLETKVTRMVPKIMKRKWNNAENLEADDTEYDGDTFAKKPQEDISSEYLVDQESSSTE 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02945 666 Gene3D - 336 491 IPR046342 -
Viun8g02945 666 ProSiteProfiles CNNM transmembrane domain profile. 156 342 IPR002550 -
Viun8g02945 666 CDD CBS_pair_CorC_HlyC_assoc 356 477 IPR044751 -
Viun8g02945 666 PANTHER HEMOLYSIN-RELATED 158 626 - -
Viun8g02945 666 MobiDBLite consensus disorder prediction 561 581 - -
Viun8g02945 666 SUPERFAMILY CBS-domain pair 344 483 IPR046342 -
Viun8g02945 666 Pfam CBS domain 425 480 IPR000644 -
Viun8g02945 666 Pfam CBS domain 357 415 IPR000644 -
Viun8g02945 666 SUPERFAMILY FAD-binding/transporter-associated domain-like 499 606 IPR036318 GO:0050660
Viun8g02945 666 ProSiteProfiles CBS domain profile. 428 486 IPR000644 -
Viun8g02945 666 ProSiteProfiles CBS domain profile. 361 422 IPR000644 -
Viun8g02945 666 MobiDBLite consensus disorder prediction 627 666 - -
Viun8g02945 666 FunFam Magnesium/cobalt efflux protein CorC 338 488 - -
Viun8g02945 666 MobiDBLite consensus disorder prediction 639 654 - -
Viun8g02945 666 Gene3D - 498 616 IPR016169 -
Viun8g02945 666 SMART CorC_HlyC_2 501 604 IPR005170 -
Viun8g02945 666 Pfam Transporter associated domain 502 603 IPR005170 -
Viun8g02945 666 Pfam Cyclin M transmembrane N-terminal domain 166 342 IPR002550 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02945 Viun-Chr8 37028387 37036365 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02945 - - gmx:100778907 1170.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02945 8 37028387 37036365 Viun8g02945 8 37028387 37036365 ECH